Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G02020 716 / 0 nitroreductase family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G146100 [exp] 800 / 0 AT1G02020 779 / 0.0 nitroreductase family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0529 [flax] [poplar] FMN-dep-NRtase PF00881 [flax] [poplar] Nitroreductase Nitroreductase family
Representative CDS sequence Show only first row Show all	>Lus10030289 pacid=23153163 polypeptide=Lus10030289 locus=Lus10030289.g ID=Lus10030289.BGIv1.0 annot-version=v1.0 ATGTCACCGTCGCGTTTCCTCACTTCCCACTTCCTCCTCCGCCCATTCCCGCCGACATCCCTTCCCGCCGCCGCTGCAATGTCCTCCTCCTCAAATTTTC CGGCAGAACCAGCCGACCATGAGCCAAATAACATCACCAAAGTTCTAACCTACCATAACCAGACGAAGCACGCGATGCACAAGTACGCCAGAGGCCCTCA CGGCCTCGACTGGGCAAACCAGCCCAACCCATTCCGCCGCTACTCCGCCGCTCCTCTCCTCCCTCTCCCGCTCCCTCCTCCTTCATCATCTTCTCCGCTC TACCACTCCATTTTCACTTCCCTCCCTTCTCCTCCCCAGCCAATCACGAAATCCACAATCTCGCAGCTCTTCTACAACTCCATGGCGCTCTCCGCCTGGA AAACCATCGGGTCGTCCACCTGGTCCCTCCGGGTCAACCCGAGCAGCGGCAACTTACACCCCACCGAATCATATTTAATCTCCCCTCCTATTGATTCCTT GTCCGATTCTCCCTTCGTTGCTCATTATGCTCCTAAAGAGCATGGTTTAGAGATCAGAGCCATGATTGATCCTCTTCTTCCCTCCTTCCCCATGAAGGAT TCGTTCATGGTGGGAATCTCCTCCATATTCTGGCGGGAGGCATGGAAGTACGGTGAAAGAGCATTTCGTTACTGCAACCACGACGTCGGCCATGCCATTG CCGCCATTTCCATGGCGGCAGCTGAGCTTGGATGGGATGTGAAGTTGCTTGACGGATTAGGGTTTAACGAGCTACAGAGGTTAATGGGGCTTCATCATGG TTTCTCAATTCCGGAGATTGAGATTGAGCATCCTGACTGTGTGCTTCTTGTTTTCCCTGCTGATCAAATTCAAAATCACAGTAGCTTGAGTTTTAACTAT GAGGAGCTCTGCTCTGCAGCTATGAAATTTGAAGAGCTGGATTGGAAAGGGAAACCGAACCTGCTAAGCAAAGAGCATGTCTGTTGGGATATAATCTACA AAACGGCTGACGCCGTTAAAAAGCCATCATCTTTACGAGATGGATTCCGCATTGAACAATTTCAAGGGCGTGGAGTGCATAGTGAGAGTTCTTACAGAGG TTTGACGGTAGGGGAAGTTGTTAGGAAGAGGAGGAGTGCAGTTGACATGGATGGAGTGACCAAGATAGACAGGGATGCATTTTACCAGATCATGCTACAC TGTCTTCCTTCCAAACAGCAATCGGCATTGCCGTTTCGAAGTTTGTCGTGGGATGCCGAGGTGCACGCAGCTTTGTTTGTTCACAGGGTGGAAGGACTGC CGAAAGGGTTGTATTTCCTGGTGAGGAATGAGGAGCATTTGGATCAGATTAGGAAGGGTACAAGAAGTGAATTTAAATGGGAAAAACCAGAGGGTTGTCC TGAAAGTTTACCTCTTTATGAGCTTGCTAGAGGTGATTGCCAAAGGGTTGCCAAAGCACTTTCCTGCCACCAGGACATTGCTGGTGATGGCTGCTTCAGC CTCGGAATGGTGGCTCGATTCGAGCCTGCCTTAAGCAGCAAGGGTGCGTGGATGTACCCTAGGTTGTTCTGGGAAACTGGAGTTCTAGGACAAGTTCTGT ACCTGGAAGCACATGCGATTGGGATATCTGCAACAGGAATCGGCTGCTTCTTTGATGACCCTGTACATGAGCTCCTTGGATTAAGAGGGTCAGAATTTCA GTCTCTCTATCACTTCACTGTGGGAGGTCCTGTTTTGGACAAGCGGATAATGAGTCTTCCAGCTTATCCTGGACCTGCTATGGATGCGTGA
AA sequence Show only first row Show all	>Lus10030289 pacid=23153163 polypeptide=Lus10030289 locus=Lus10030289.g ID=Lus10030289.BGIv1.0 annot-version=v1.0 MSPSRFLTSHFLLRPFPPTSLPAAAAMSSSSNFPAEPADHEPNNITKVLTYHNQTKHAMHKYARGPHGLDWANQPNPFRRYSAAPLLPLPLPPPSSSSPL YHSIFTSLPSPPQPITKSTISQLFYNSMALSAWKTIGSSTWSLRVNPSSGNLHPTESYLISPPIDSLSDSPFVAHYAPKEHGLEIRAMIDPLLPSFPMKD SFMVGISSIFWREAWKYGERAFRYCNHDVGHAIAAISMAAAELGWDVKLLDGLGFNELQRLMGLHHGFSIPEIEIEHPDCVLLVFPADQIQNHSSLSFNY EELCSAAMKFEELDWKGKPNLLSKEHVCWDIIYKTADAVKKPSSLRDGFRIEQFQGRGVHSESSYRGLTVGEVVRKRRSAVDMDGVTKIDRDAFYQIMLH CLPSKQQSALPFRSLSWDAEVHAALFVHRVEGLPKGLYFLVRNEEHLDQIRKGTRSEFKWEKPEGCPESLPLYELARGDCQRVAKALSCHQDIAGDGCFS LGMVARFEPALSSKGAWMYPRLFWETGVLGQVLYLEAHAIGISATGIGCFFDDPVHELLGLRGSEFQSLYHFTVGGPVLDKRIMSLPAYPGPAMDA

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G02020			nitroreductase family protein ...		Lus10030289 [exp]	0	1
AT1G19440		KCS4	3-ketoacyl-CoA synthase 4 (.1)		Lus10001657 [exp]	3.7	0.8317
AT5G13430			Ubiquinol-cytochrome C reducta...		Lus10041513 [exp]	4.2	0.8094
AT2G36930	C2H2ZnF		zinc finger (C2H2 type) family...		Lus10023928 [exp]	5.7	0.8217
AT3G12050			Aha1 domain-containing protein...		Lus10021072 [exp]	8.2	0.8406
AT1G76060		EMB1793	EMBRYO DEFECTIVE 1793, LYR fam...		Lus10005621 [exp]	10.2	0.8224
AT4G39520			GTP-binding protein-related (....		Lus10006801 [exp]	12.6	0.8084
AT5G45320			unknown protein		Lus10037259 [exp]	13.0	0.7319
AT4G26780		MGE2, AR192	mitochondrial GrpE 2, Co-chape...		Lus10043180 [exp]	13.6	0.7643
AT2G35900			unknown protein		Lus10021249 [exp]	14.7	0.8089
AT1G11840		ATGLX1	glyoxalase I homolog (.1.2.3.4...		Lus10002943 [exp]	16.4	0.8031

Compare expression of checked genes

Lus10030289 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.