Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G56830 117 / 2e-33 Protein of unknown function (DUF565) (.1), Protein of unknown function (DUF565) (.2), Protein of unknown function (DUF565) (.3) AT1G65420 82 / 6e-20 NPQ7 NONPHOTOCHEMICAL QUENCHING 7, Protein of unknown function (DUF565) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10039937 [exp] 78 / 9e-19 AT1G65420 200 / 3e-66 NONPHOTOCHEMICAL QUENCHING 7, Protein of unknown function (DUF565) (.1) Lus10027674 [exp] 77 / 1e-17 AT1G65420 195 / 2e-63 NONPHOTOCHEMICAL QUENCHING 7, Protein of unknown function (DUF565) (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G146000 [exp] 152 / 4e-47 AT3G56830 171 / 3e-53 Protein of unknown function (DUF565) (.1), Protein of unknown function (DUF565) (.2), Protein of unknown function (DUF565) (.3) Potri.008G076900 [exp] 80 / 4e-19 AT1G65420 229 / 2e-76 NONPHOTOCHEMICAL QUENCHING 7, Protein of unknown function (DUF565) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF04483 [flax] [poplar] DUF565 Protein of unknown function (DUF565)
Representative CDS sequence Show only first row Show all	>Lus10030290 pacid=23153004 polypeptide=Lus10030290 locus=Lus10030290.g ID=Lus10030290.BGIv1.0 annot-version=v1.0 ATGGTATGGAGGACGAGGAGCAGCAGATTCGACTCTTCCTCCTCGGATGGCGGTGGAACGCGGCTAATCAGGGCCATTCGCGGTCTTCAGACGAGGATTG GGGTAAGATTTCAGGAGTTGAGGAAGAATCTTCCGTTGAAGCTGCTGTTCTTCTTGGTTGGTTTCTACTGCGCCACTGCTTTTGCTACTGTGATTGGCCA GACCGGTGACTGGGACATTTTATCTGCTGCACTGGCTGTGGCGGTCGTGGAAGCCATTGGAGCTCTCATGTATAAGAACTCTCTGCGCTTGTTCAGCAAT GTTAAGAGCTTGGTCACTGTGTTTAACTATTGGAAGGCTGGTCTTTCTCTTGGACTCTTCTTGGATTCGTTCAAGTATGATGCTGATAAGCTTATAAGTT TCGATCATCTCCTGCATTTTGATTTATTATGA
AA sequence Show only first row Show all	>Lus10030290 pacid=23153004 polypeptide=Lus10030290 locus=Lus10030290.g ID=Lus10030290.BGIv1.0 annot-version=v1.0 MVWRTRSSRFDSSSSDGGGTRLIRAIRGLQTRIGVRFQELRKNLPLKLLFFLVGFYCATAFATVIGQTGDWDILSAALAVAVVEAIGALMYKNSLRLFSN VKSLVTVFNYWKAGLSLGLFLDSFKYDADKLISFDHLLHFDLL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G56830			Protein of unknown function (D...		Lus10030290 [exp]	0	1
AT1G17450			B-block binding subunit of TFI...		Lus10006533 [exp]	4.9	0.8490
AT3G19190		ATATG2	autophagy 2 (.1)		Lus10019868 [exp]	7.3	0.8670
AT5G47360			Tetratricopeptide repeat (TPR)...		Lus10034396 [exp]	7.5	0.7713
					Lus10001309 [exp]	8.7	0.8563
AT5G41980			unknown protein		Lus10018174 [exp]	11.3	0.7642
AT3G19190		ATATG2	autophagy 2 (.1)		Lus10014045 [exp]	12.0	0.8459
AT1G04390			BTB/POZ domain-containing prot...		Lus10027380 [exp]	17.0	0.8351
AT4G37480			Chaperone DnaJ-domain superfam...		Lus10011536 [exp]	17.1	0.8389
AT2G30120			unknown protein		Lus10026389 [exp]	18.0	0.8154
AT1G19290			Pentatricopeptide repeat (PPR)...		Lus10008185 [exp]	18.2	0.8175

Compare expression of checked genes

Lus10030290 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.