Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G00080 153 / 1e-46 UNE11 unfertilized embryo sac 11, Plant invertase/pectin methylesterase inhibitor superfamily protein (.1) AT1G62770 127 / 2e-36 Plant invertase/pectin methylesterase inhibitor superfamily protein (.1) AT4G12390 120 / 1e-33 PME1 pectin methylesterase inhibitor 1 (.1) AT5G62350 116 / 2e-32 Plant invertase/pectin methylesterase inhibitor superfamily protein (.1) AT4G25260 112 / 1e-30 Plant invertase/pectin methylesterase inhibitor superfamily protein (.1) AT3G47380 104 / 9e-28 Plant invertase/pectin methylesterase inhibitor superfamily protein (.1) AT5G62360 97 / 1e-24 Plant invertase/pectin methylesterase inhibitor superfamily protein (.1) AT2G01610 96 / 5e-24 Plant invertase/pectin methylesterase inhibitor superfamily protein (.1) AT5G20740 89 / 1e-21 Plant invertase/pectin methylesterase inhibitor superfamily protein (.1) AT4G25250 88 / 2e-21 Plant invertase/pectin methylesterase inhibitor superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10001988 [exp] 370 / 8e-132 AT4G00080 154 / 5e-47 unfertilized embryo sac 11, Plant invertase/pectin methylesterase inhibitor superfamily protein (.1) Lus10031133 [exp] 121 / 4e-34 AT5G62350 211 / 8e-70 Plant invertase/pectin methylesterase inhibitor superfamily protein (.1) Lus10031713 [exp] 117 / 7e-33 AT5G62350 202 / 4e-66 Plant invertase/pectin methylesterase inhibitor superfamily protein (.1) Lus10027198 [exp] 115 / 7e-32 AT5G62350 191 / 3e-62 Plant invertase/pectin methylesterase inhibitor superfamily protein (.1) Lus10038914 [exp] 114 / 8e-32 AT5G62350 192 / 1e-62 Plant invertase/pectin methylesterase inhibitor superfamily protein (.1) Lus10032230 [exp] 106 / 3e-28 AT1G62770 166 / 9e-52 Plant invertase/pectin methylesterase inhibitor superfamily protein (.1) Lus10024593 [exp] 99 / 2e-25 AT1G62770 162 / 2e-50 Plant invertase/pectin methylesterase inhibitor superfamily protein (.1) Lus10031138 [exp] 84 / 7e-20 AT5G62360 172 / 3e-54 Plant invertase/pectin methylesterase inhibitor superfamily protein (.1) Lus10031711 [exp] 82 / 3e-19 AT5G62360 145 / 4e-44 Plant invertase/pectin methylesterase inhibitor superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G145800 [exp] 187 / 7e-60 AT4G00080 164 / 4e-51 unfertilized embryo sac 11, Plant invertase/pectin methylesterase inhibitor superfamily protein (.1) Potri.014G067500 [exp] 176 / 2e-55 AT4G00080 156 / 1e-47 unfertilized embryo sac 11, Plant invertase/pectin methylesterase inhibitor superfamily protein (.1) Potri.012G127500 [exp] 120 / 8e-34 AT5G62350 220 / 2e-73 Plant invertase/pectin methylesterase inhibitor superfamily protein (.1) Potri.015G128700 [exp] 119 / 1e-33 AT5G62350 221 / 7e-74 Plant invertase/pectin methylesterase inhibitor superfamily protein (.1) Potri.003G113700 [exp] 110 / 7e-30 AT4G12390 178 / 1e-56 pectin methylesterase inhibitor 1 (.1) Potri.006G137800 [exp] 99 / 1e-25 AT5G20740 205 / 2e-67 Plant invertase/pectin methylesterase inhibitor superfamily protein (.1) Potri.015G128100 [exp] 97 / 7e-25 AT5G62360 221 / 1e-73 Plant invertase/pectin methylesterase inhibitor superfamily protein (.1) Potri.008G132600 [exp] 95 / 6e-24 AT1G14890 216 / 1e-71 Plant invertase/pectin methylesterase inhibitor superfamily protein (.1) Potri.015G128200 [exp] 94 / 9e-24 AT5G62360 172 / 1e-54 Plant invertase/pectin methylesterase inhibitor superfamily protein (.1) Potri.015G128300 [exp] 91 / 1e-22 AT5G62360 192 / 1e-62 Plant invertase/pectin methylesterase inhibitor superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF04043 [flax] [poplar] PMEI Plant invertase/pectin methylesterase inhibitor
Representative CDS sequence Show only first row Show all	>Lus10030292 pacid=23153024 polypeptide=Lus10030292 locus=Lus10030292.g ID=Lus10030292.BGIv1.0 annot-version=v1.0 ATGGCGACCACCACCGCCCATTTCCTCCCTCTCCTAATCCTCCTCACCCTCACCGTCTCTGTAAACTCGAACCCCTCGACACCATCCTCGTCTTCCTCGA ACCCTTACATCGTAAAGCAATGCCAAACCACAAGATACCCGTCCCTCTGCGTCCAGTGCCTCTCCACCTTCGCCAACTCAACCTCCCACCACTCCCCACA GCAGCTAGCCCGCATCGCCCTCACCGTAAGCCTCTACAAAGCCCGCCTCACCAGATCCTTCCTCCTCAAAGTCAACCGCAACCTCAAGGCGTTGACCAAG CCACGCCACGACCACTTAGTCATGAACGACTGCCTTGGCCAGCTGGCCGACGGCATCCAGCAGCTCAGCCGGTCCATCCTCGAGCTCGCCCAGCTCGAGA AGAAAGGCGGAGTCGCGGCAAACGACGACGCTGTTTTGTGGCACGTGAGGAACGTGGAGACCTGGGTGAGCGCTGCCCAGACGGATGCCGACACGTGCTT GGACGAGTTCCATGGGAAGAAGATGAGTAAGCTTCGGGCTACCATTAAGGTGAGGGTTATGAACGTTGCGGAAACTGCTAGTAATGCTCTGGCTTTGTTT CAGCGCTTCGTTGTTGCGAGGTTTGGTGCTCGGTTCGCCTCCAAGCGTTATCCGTGA
AA sequence Show only first row Show all	>Lus10030292 pacid=23153024 polypeptide=Lus10030292 locus=Lus10030292.g ID=Lus10030292.BGIv1.0 annot-version=v1.0 MATTTAHFLPLLILLTLTVSVNSNPSTPSSSSSNPYIVKQCQTTRYPSLCVQCLSTFANSTSHHSPQQLARIALTVSLYKARLTRSFLLKVNRNLKALTK PRHDHLVMNDCLGQLADGIQQLSRSILELAQLEKKGGVAANDDAVLWHVRNVETWVSAAQTDADTCLDEFHGKKMSKLRATIKVRVMNVAETASNALALF QRFVVARFGARFASKRYP

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G00080		UNE11	unfertilized embryo sac 11, Pl...		Lus10030292 [exp]	0	1
AT2G43870			Pectin lyase-like superfamily ...		Lus10002124 [exp]	1.0	0.9738
AT5G60520			Late embryogenesis abundant (L...		Lus10036107 [exp]	2.4	0.9735
AT2G45570		CYP76C2	"cytochrome P450, family 76, s...		Lus10027426 [exp]	5.5	0.9716
AT1G06330			Heavy metal transport/detoxifi...		Lus10020704 [exp]	6.9	0.9492
AT3G18200			nodulin MtN21 /EamA-like trans...		Lus10038959 [exp]	8.2	0.9684
AT2G02360		ATPP2-B10	phloem protein 2-B10 (.1)		Lus10003444 [exp]	8.3	0.9499
AT1G53130		GRI	GRIM REAPER, Stigma-specific S...		Lus10005544 [exp]	8.8	0.9670
AT1G04220		KCS2	3-ketoacyl-CoA synthase 2 (.1)		Lus10039399 [exp]	8.9	0.9676
					Lus10025963 [exp]	9.9	0.9557
AT4G10350	NAC	BRN2, NST4, ANA...	BEARSKIN 2, NAC domain contain...		Lus10013782 [exp]	12.3	0.9522

Compare expression of checked genes

Lus10030292 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.