Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G60740 1514 / 0 TFCD, EMB133, CHO, TTN1 TITAN 1, TUBULIN FOLDING COFACTOR D, EMBRYO DEFECTIVE 133, CHAMPIGNON, ARM repeat superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10001987 [exp] 1692 / 0 AT3G60740 1185 / 0.0 TITAN 1, TUBULIN FOLDING COFACTOR D, EMBRYO DEFECTIVE 133, CHAMPIGNON, ARM repeat superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G067400 [exp] 1705 / 0 AT3G60740 1664 / 0.0 TITAN 1, TUBULIN FOLDING COFACTOR D, EMBRYO DEFECTIVE 133, CHAMPIGNON, ARM repeat superfamily protein (.1) Potri.002G145750 [exp] 70 / 2e-14 AT3G60740 67 / 1e-14 TITAN 1, TUBULIN FOLDING COFACTOR D, EMBRYO DEFECTIVE 133, CHAMPIGNON, ARM repeat superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF12612 [flax] [poplar] TFCD_C Tubulin folding cofactor D C terminal
Representative CDS sequence Show only first row Show all	>Lus10030293 pacid=23153181 polypeptide=Lus10030293 locus=Lus10030293.g ID=Lus10030293.BGIv1.0 annot-version=v1.0 ATGGCCGCAACCGAAAAGAAAAGTTCGAAAGAGGACTACGAAGCGGCTTTTTCTGTGGAAGAAGTTGAGGAAGACGAGCACGGTAGCAAAGAACGAGTTC TACAAAAGTACTTCTTGCTGGAGTGGAAGCTCGTCAAGTCCTTACTCGATGACATCCTCGCCAATGGCCGCGTCGTCGATCTCTCTTCCGTCCACAAGAT CCGATCCATCATGGACAAGTATCAGGAGGAGGGGCAGCTAGTGGAGCCATACCTGGAGAGCATTGTGTCTCCATTAATGTTGATTATACGTTCGAGAACA ATTGAGTTGGGAGTTGATTCTGAGGAGATTCTTCAAGTTATGAAACCTATTTGCATAATCCTTTATACTCTGGTGACTGTTTGCGGACACAAGGCTGTTG CAAAGTTCTTCCCGCACCAGGTATCAGACCTTGAGCTGGCAGTTTCTCTTTTGGACAAGTGCCACAAAACTGCTTCAGCGACGTCCCTGCGACAGGAAAG CACCGGCGAGATGGAGGCTCAATGTGTCATTCTTTTGTGGCTTTCTGTTCTTGTCTTGGTCCCTTTCGACATTTCGTCCATTGATACAAGCATTTCCCAA GGAAGTGGAGATGAGCCAGGTCCTCTGGTGTTGAAGGTTTTGAAATTCTCCAAGGACTATATCTCCAGTGCTGGTCCAATGCGCACCATGTCTGGGTTGC TGCTCTCTAGGCTTCTATCACGGCCTGATATGCCAATGGCTTTCACCAGCTTTCTGGGATGGACTCATGAAGTGTTGACTTCTAGCACAGATGATACAAT CTCACATTTTCGGCTACTAGGTGTTTTGGAAGCGCTAGCTGCGATCTTCAAGACAGGTGCACGAAAACAATTGATAGATGTGGTTCCCGTTGTGTGGGGT GATGTTTCATTGTTGTCAAAGTCCACCATGGCTTCTCGTAGTCCTTTGCTCCGTAAATTACTGGTGAAGTTATGTCAGAGAATTGCACTTACATGCCTCC CTCACCGTGCACCAGTCTGGCGTTATGTGGGAAAAACCAGTTCACTCAGAGAGAATGTAATTTTGACTGCTATTGAAGGACCTGATGGATGCAGTCGAGA TCTGAGCATCAACCTTAGTGAATCAGAAAGGACTGCAAACTGCGTTCAAGATGATGACATGGATGTTCCAGAAATAATTGAAGAGATCATCGAGATGCTA CTTTTAGGACTAAAAGACACAGACACAGTTGTACGTTGGTCTGCAGCGAAAGGCATGGGGCGATTAACTTCACGTTTGACTTCTGCTCTTTCAGATGAGA TACTGTCTTCAGTTGTGGAGCTATTTTCTCCTGGTGAGGGTGATGGTTCATGGCACGGAGCCTGCTTAGCTTTGGCTGAACTAGCACGTAGAGGACTGCT GTTACCCACCAGTCTACCAAAAGTTGTACCTTTCGTTGCAAAGGCCTTACATTATGATGTTCGAAGAGGTCCACATAGTGTTGGATCCCACGTCCGTGAT GCTGCTGCATATGTTTGTTGGGCTTTTGGTCGTGCATATTATCATTCTGACATGAAAGCTATACTGGAGAAGTTTGCGCCACACCTCTTAACTGTGGCCT GCTATGACCGGGAGGTGAATTGCAGAAGAGCAGCGGCAGCTGCATTTCAGGAAAATGTAGGAAGACAAGGGAACTTTCCTCATGGCATTGACATAGTCAA TTCTGCAGATTATTTTTCACTTTCGTCCCGAGTTAATTCTTATCTTCATGTGGCCGTCCATATTGCTGGATATGATGGATACATGTACCCATTTGCAGAG GAACTTCTGGATACCAAGATAGGGCACTGGGATAAAGGCCTGAGAGAACTTGCCTCCGAAGCTCTTTCTGCTCTCGTCAAATATGATCCTCAGTATTTCG AACGCTTCGTCTTGGAGAAACTAATTCCTTCTACTCTATCATCTGATTTGTGTGTGCGTCATGGTGCAATTTTATCATCAGCAGAAGTTGTACTGGCTCT GCATCAATGTCAATACACTCTTACTACAGACAAACACAAGCAACTTGCTGGAGTTGTCCCTGCTATTGAGAAAGCACGTCTTTATCGAGGGAAGGGTGGA GAAATAATGCGCTCTGCTGTTTCTCGGTTTATCGAATGCATCTCTATCTCTGGTGTGGCGATACCTGAAAGGATAAGACGAAGTTTGCTTGATACTATAA CTGAGAACCTAAGACATCCTAATAGTCAAATACAGAATGCTGCTGTTAAAGCCCTGGAGCATTTTGTTAAAGCTTATCTTCTGACGGCAAACAGCGGAGG AACAGGCGCTATCGTGTCAAAGTACCTTCAACAGTTGGGTGACCAAAATGTCGCAGTAAGAAGAGGGTCCGCTCTGGCATTAGGTGTTTTGCCATATGAG ATATTGGCTGACAAGTGGAAAGATGTCATTTTGAAGCTTTGCAAATCTTCTGCAATTGAGGATAACCCTGACGAAAGGGATGCTGAAGCACGAGTAAATG CTGTCAAAGGACTCGTATCAGTCTGCAAGACCTTAAGTCAGGCCAGAAAACTTCGGGAAATGTCCCCTGAACAGGAGGATGACTTGTCCCTTTATCATCT GATGAGGAATGAAGTGATGATCAGTTTACTTAGAGCCCTTGATGATTATTCTGTCGATAACAGGGGTGATGTCGGTTCTTGGGTCCGTGAAGCTGCCATG GAAGGCCTCAAGGACTGTACATATATCCTCTGTTCTGTGGATATAGAAGAAAGAAACCCCACCTTTCCATTCTTCGATGAAAAACTTGCTAATGCTGTGG TTGGGGGACTTGTTAAGCAAGCTGTAGAAAAAATGGATAAGCTAAGAGAAGCTGCTGCAAAGGCTCTTCAAACAATTCTGTATAACAGGAAGCTATTCGT CCCGTCCATACCGTATAGGGAAAAGCTAGAGGAAATCATTCCGGATGAATCCGATACAAAATGGGCGGTACCGAACTTCTCGTATCCGCGATTCGTGCAG TTACTCCAGTTTAGTTGTTACAGTAGTTTTCTGGTATCTGGCTTAGTGGTTTCGGTTGGTGGGTTGCAAGACTCTTTGAGGAAGGCATCAATGGCTTCAT TGTTGGACTATCTTCAAGTGGCATCCACTGAACATCCACATCAGAGAAGGTTAAGAGAGAAAATGCTAAGTAGTGACATCCTTTCGGTTCTTCAACGGTA CGTGAGATGCGACAGAGTCATTGTGCCAACCTTGAAGACAATCGAAATCCTCTTCAGCAGAAGGATTTTCTTTGACATGGAGGCTGAGACTCGAACGTTT TTTGATGGTGTTTTGGAGTCGCTTCTTGTGGAATTGAAGGCATCGAGGGACTTTGGAAAGCTGTACGCTGGTATTGCCATACTAGGCTACATTGCCTCAA CATCAGAACCTGTCAACATTCAGGCTGTAACTCAGCTTCTTACTTTCCTCGGCCATCGATATCCCAAGATCAGGAAAGCTTCAGCGGAACAAGTGTATCT TGTTCTCCTACAGAACCCCGATCTCCTGCCAGAGGATAAGATAGAGGAAGCGTTGGAAATCATCTCCGAGACGTGCTGGGACGGAGATGTGGACGGGGCA AAGAACCAGTTAGTGACATTGTGGCAAATGGCTGGTCTGGAACTAGCACAACTCAAGGTTGGAATTCGTCCAACAAGGGTCGTAAAGGAGACTACCACAC CGAAGGATGACCAAGACGAGAACGCCTCGTATTCGTCGCTCGTCGAGTCAACTGGGTTCTGA
AA sequence Show only first row Show all	>Lus10030293 pacid=23153181 polypeptide=Lus10030293 locus=Lus10030293.g ID=Lus10030293.BGIv1.0 annot-version=v1.0 MAATEKKSSKEDYEAAFSVEEVEEDEHGSKERVLQKYFLLEWKLVKSLLDDILANGRVVDLSSVHKIRSIMDKYQEEGQLVEPYLESIVSPLMLIIRSRT IELGVDSEEILQVMKPICIILYTLVTVCGHKAVAKFFPHQVSDLELAVSLLDKCHKTASATSLRQESTGEMEAQCVILLWLSVLVLVPFDISSIDTSISQ GSGDEPGPLVLKVLKFSKDYISSAGPMRTMSGLLLSRLLSRPDMPMAFTSFLGWTHEVLTSSTDDTISHFRLLGVLEALAAIFKTGARKQLIDVVPVVWG DVSLLSKSTMASRSPLLRKLLVKLCQRIALTCLPHRAPVWRYVGKTSSLRENVILTAIEGPDGCSRDLSINLSESERTANCVQDDDMDVPEIIEEIIEML LLGLKDTDTVVRWSAAKGMGRLTSRLTSALSDEILSSVVELFSPGEGDGSWHGACLALAELARRGLLLPTSLPKVVPFVAKALHYDVRRGPHSVGSHVRD AAAYVCWAFGRAYYHSDMKAILEKFAPHLLTVACYDREVNCRRAAAAAFQENVGRQGNFPHGIDIVNSADYFSLSSRVNSYLHVAVHIAGYDGYMYPFAE ELLDTKIGHWDKGLRELASEALSALVKYDPQYFERFVLEKLIPSTLSSDLCVRHGAILSSAEVVLALHQCQYTLTTDKHKQLAGVVPAIEKARLYRGKGG EIMRSAVSRFIECISISGVAIPERIRRSLLDTITENLRHPNSQIQNAAVKALEHFVKAYLLTANSGGTGAIVSKYLQQLGDQNVAVRRGSALALGVLPYE ILADKWKDVILKLCKSSAIEDNPDERDAEARVNAVKGLVSVCKTLSQARKLREMSPEQEDDLSLYHLMRNEVMISLLRALDDYSVDNRGDVGSWVREAAM EGLKDCTYILCSVDIEERNPTFPFFDEKLANAVVGGLVKQAVEKMDKLREAAAKALQTILYNRKLFVPSIPYREKLEEIIPDESDTKWAVPNFSYPRFVQ LLQFSCYSSFLVSGLVVSVGGLQDSLRKASMASLLDYLQVASTEHPHQRRLREKMLSSDILSVLQRYVRCDRVIVPTLKTIEILFSRRIFFDMEAETRTF FDGVLESLLVELKASRDFGKLYAGIAILGYIASTSEPVNIQAVTQLLTFLGHRYPKIRKASAEQVYLVLLQNPDLLPEDKIEEALEIISETCWDGDVDGA KNQLVTLWQMAGLELAQLKVGIRPTRVVKETTTPKDDQDENASYSSLVESTGF

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G60740		TFCD, EMB133, C...	TITAN 1, TUBULIN FOLDING COFAC...		Lus10030293 [exp]	0	1
AT1G80410		OMA, EMB2753	OMISHA, EMBRYO DEFECTIVE 2753,...		Lus10023111 [exp]	2.6	0.9423
AT1G61010		CPSF73-I	cleavage and polyadenylation s...		Lus10001371 [exp]	3.5	0.9164
AT1G15440		ATPWP2	\(PERIODIC TRYPTOPHAN PROTEIN ...		Lus10034114 [exp]	6.5	0.9328
AT5G19820		EMB2734	embryo defective 2734, ARM rep...		Lus10013763 [exp]	6.9	0.9127
AT3G11830			TCP-1/cpn60 chaperonin family ...		Lus10008406 [exp]	9.2	0.9312
AT5G14520			pescadillo-related (.1)		Lus10000357 [exp]	12.0	0.9085
AT1G31660			unknown protein		Lus10032891 [exp]	12.1	0.9160
AT4G27640			ARM repeat superfamily protein...		Lus10034202 [exp]	12.2	0.8617
AT1G80410		OMA, EMB2753	OMISHA, EMBRYO DEFECTIVE 2753,...		Lus10011474 [exp]	12.6	0.9232
AT5G25757			RNA polymerase I-associated fa...		Lus10038622 [exp]	13.0	0.9266

Compare expression of checked genes

Lus10030293 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.