Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G45200 298 / 2e-102 ATGOS12, GOS12 golgi snare 12 (.1.2) AT1G15880 82 / 1e-18 ATGOS11, GOS11 golgi snare 11 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10001986 [exp] 331 / 1e-115 AT2G45200 437 / 5e-158 golgi snare 12 (.1.2) Lus10009285 [exp] 307 / 3e-106 AT2G45200 444 / 2e-160 golgi snare 12 (.1.2) Lus10015880 [exp] 97 / 2e-25 AT2G45200 151 / 3e-47 golgi snare 12 (.1.2) Lus10026058 [exp] 74 / 7e-16 AT1G15880 288 / 4e-100 golgi snare 11 (.1) Lus10014349 [exp] 71 / 3e-15 AT1G15880 214 / 7e-72 golgi snare 11 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G066800 [exp] 295 / 3e-101 AT2G45200 372 / 3e-132 golgi snare 12 (.1.2) Potri.002G145200 [exp] 261 / 6e-88 AT2G45200 365 / 3e-129 golgi snare 12 (.1.2) Potri.001G047100 [exp] 84 / 2e-19 AT1G15880 369 / 2e-131 golgi snare 11 (.1) Potri.003G180800 [exp] 84 / 2e-19 AT1G15880 365 / 4e-130 golgi snare 11 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0147 [flax] [poplar] Traffic PF12352 [flax] [poplar] V-SNARE_C Snare region anchored in the vesicle membrane C-terminus
Representative CDS sequence Show only first row Show all	>Lus10030294 pacid=23153211 polypeptide=Lus10030294 locus=Lus10030294.g ID=Lus10030294.BGIv1.0 annot-version=v1.0 ATGGTGGAATTGATCCGCGCCTGTTTATTTCTTCTGTTTCAAATGTGGAGTTTCTGCATTGCGTTTCATAGTGAGGTGTTGCAGGTTCCCATGCTTGATT CTCTACTATCTGTTCTTATGGATAGAAGCTTGAATCCAGGATATGTTGAGACTGGATCACAAGCTGTTGCATCCAGCGGGTCATGGAAATCTATGGAAAT GGAAATCCAGTCACTGCTTGAGAAGCTATTAGACATTAATGACTCGATGAGTAGATGTGCAGCATCTGCAGCACCAACTACTTCAGTAACTCAAAAGCTT GCGAGACACCGAGACATACTCCACGAGTTCACTCAGGAATTCAGAAGAATCAAGGGAAACATACACTCGATGAAGGAGCATGCCGAATTACTCAGTTCGG TGAGAGATGATATCATTGAGTACAAGGCTTCAGGAAGCATGTCTCCCAAAATGCAAATACTACGTGAAAGAGCTGCCATCCATGGAAGCATCTCCCATAT AGATGATGTTATAAGTCAGGCTCAGGCAACCAGGGCTGTCTTGGGATCTCAGAGGTCTTTCTTTGGAGACGTTCAAGGGAAAGTGAAACACTTAAGTGAC AAATTCCCAGTCATACGTGGCCTACTTGGTGAGAATTCAGTTATTACAGAGGTTTTACTGAACAGAAGGGATACTCTGTGTAACAAGTGTGTTCGGCTGT GGTGGTGGTATGACCTTAGATGTGATTTCTTGGTGATGATATATAGAGATATCAGATTCATTATGGGTTTCTAA
AA sequence Show only first row Show all	>Lus10030294 pacid=23153211 polypeptide=Lus10030294 locus=Lus10030294.g ID=Lus10030294.BGIv1.0 annot-version=v1.0 MVELIRACLFLLFQMWSFCIAFHSEVLQVPMLDSLLSVLMDRSLNPGYVETGSQAVASSGSWKSMEMEIQSLLEKLLDINDSMSRCAASAAPTTSVTQKL ARHRDILHEFTQEFRRIKGNIHSMKEHAELLSSVRDDIIEYKASGSMSPKMQILRERAAIHGSISHIDDVISQAQATRAVLGSQRSFFGDVQGKVKHLSD KFPVIRGLLGENSVITEVLLNRRDTLCNKCVRLWWWYDLRCDFLVMIYRDIRFIMGF

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G45200		ATGOS12, GOS12	golgi snare 12 (.1.2)		Lus10030294 [exp]	0	1
AT1G07960		ATPDIL5-1	PDI-like 5-1 (.1.2.3)		Lus10011641 [exp]	1.0	0.8507
AT1G15370			SNARE-like superfamily protein...		Lus10002911 [exp]	3.5	0.8375
AT5G64813		LIP1	Light Insensitive Period1, Ras...		Lus10006805 [exp]	4.2	0.8128
AT5G35080			unknown protein		Lus10008819 [exp]	4.2	0.8420
AT5G54750			Transport protein particle (TR...		Lus10028720 [exp]	4.2	0.8312
AT4G32530			ATPase, F0/V0 complex, subunit...		Lus10000694 [exp]	5.7	0.8478
AT1G09330		ECHIDNA, ECH	unknown protein		Lus10004514 [exp]	8.7	0.8350
AT5G11600			unknown protein		Lus10001603 [exp]	8.9	0.8085
AT1G74910			ADP-glucose pyrophosphorylase ...		Lus10032440 [exp]	9.9	0.8024
AT5G19440			NAD(P)-binding Rossmann-fold s...		Lus10002300 [exp]	10.6	0.8169

Compare expression of checked genes

Lus10030294 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.