Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G45210 122 / 5e-36 SAUR-like auxin-responsive protein family (.1) AT3G60690 114 / 2e-32 SAUR-like auxin-responsive protein family (.1) AT4G22620 94 / 1e-24 SAUR-like auxin-responsive protein family (.1) AT4G12410 88 / 2e-22 SAUR-like auxin-responsive protein family (.1) AT2G46690 85 / 1e-21 SAUR-like auxin-responsive protein family (.1) AT4G00880 82 / 2e-20 SAUR-like auxin-responsive protein family (.1) AT2G21210 76 / 2e-18 SAUR-like auxin-responsive protein family (.1) AT3G61900 76 / 3e-18 SAUR-like auxin-responsive protein family (.1) AT5G53590 75 / 2e-17 SAUR-like auxin-responsive protein family (.1) AT5G18080 67 / 4e-15 SAUR24 small auxin up RNA 24, SAUR-like auxin-responsive protein family (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10001985 [exp] 214 / 4e-72 AT2G45210 93 / 2e-24 SAUR-like auxin-responsive protein family (.1) Lus10009286 [exp] 145 / 2e-44 AT3G60690 150 / 2e-46 SAUR-like auxin-responsive protein family (.1) Lus10015879 [exp] 132 / 2e-39 AT3G60690 151 / 7e-47 SAUR-like auxin-responsive protein family (.1) Lus10032237 [exp] 93 / 3e-24 AT4G12410 149 / 2e-46 SAUR-like auxin-responsive protein family (.1) Lus10024600 [exp] 93 / 3e-24 AT4G12410 149 / 3e-46 SAUR-like auxin-responsive protein family (.1) Lus10004337 [exp] 87 / 5e-22 AT4G12410 110 / 2e-31 SAUR-like auxin-responsive protein family (.1) Lus10028920 [exp] 85 / 7e-22 AT4G12410 106 / 1e-30 SAUR-like auxin-responsive protein family (.1) Lus10010110 [exp] 85 / 1e-21 AT2G46690 124 / 1e-37 SAUR-like auxin-responsive protein family (.1) Lus10034507 [exp] 71 / 6e-16 AT1G75590 189 / 1e-62 SAUR-like auxin-responsive protein family (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G066900 [exp] 142 / 2e-43 AT3G60690 191 / 9e-63 SAUR-like auxin-responsive protein family (.1) Potri.002G145300 [exp] 136 / 3e-41 AT3G60690 174 / 4e-56 SAUR-like auxin-responsive protein family (.1) Potri.003G113100 [exp] 100 / 5e-27 AT4G12410 149 / 1e-46 SAUR-like auxin-responsive protein family (.1) Potri.001G119900 [exp] 90 / 3e-23 AT4G12410 140 / 8e-43 SAUR-like auxin-responsive protein family (.1) Potri.002G176400 [exp] 84 / 1e-21 AT2G46690 145 / 2e-46 SAUR-like auxin-responsive protein family (.1) Potri.014G103300 [exp] 84 / 2e-21 AT2G46690 152 / 2e-49 SAUR-like auxin-responsive protein family (.1) Potri.012G023400 [exp] 83 / 9e-21 AT2G46690 125 / 4e-38 SAUR-like auxin-responsive protein family (.1) Potri.015G006800 [exp] 80 / 1e-19 AT2G46690 128 / 2e-39 SAUR-like auxin-responsive protein family (.1) Potri.009G127400 [exp] 70 / 5e-16 AT4G34770 111 / 3e-33 SAUR-like auxin-responsive protein family (.1) Potri.009G127500 [exp] 66 / 2e-14 AT2G21210 128 / 5e-40 SAUR-like auxin-responsive protein family (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF02519 [flax] [poplar] Auxin_inducible Auxin responsive protein
Representative CDS sequence Show only first row Show all	>Lus10030295 pacid=23153064 polypeptide=Lus10030295 locus=Lus10030295.g ID=Lus10030295.BGIv1.0 annot-version=v1.0 ATGAGAAAGTTCAGGGGATTTAGATTAGGAAAGGGAATTGTCCGATTAACCAACTGGGTCTTCAGCCAGAGGCGCCGGAGGAACCGATCCCTCTACAACC GTCTCATTTCCGGCGACGACGGTGTCAGTGACTCCGCAAGGCCGATTACTAACAGGATCAGAAACTGGGGCCTCCGATTAGCCCAATCGATTCGCAACCC GAGCCGCAGGTTCGGTTCTGGGTACGAACCGGTTCCGGTTCCGAAGGGTCAACTGGCGGTGTACGTCGGTCAAAAGGGTGACGGCAGCGGCGATGTGTGT CGTAGGGTGTTGGTTCCGGTGATATACATTAATCATCCTCTGTTCGGCGAGCTTTTGAAGGGAGCACAGGAAGAGTACGGTTTCGATCAGAAAGGTGGTA TCACGATTCCTTGCCCGTTCCGGGAGTTTGAGCGGGTGAAGACCCGGATTGATGCTGGCTCCGCCGGCAGTTCTACCCGGCGGCGGTGA
AA sequence Show only first row Show all	>Lus10030295 pacid=23153064 polypeptide=Lus10030295 locus=Lus10030295.g ID=Lus10030295.BGIv1.0 annot-version=v1.0 MRKFRGFRLGKGIVRLTNWVFSQRRRRNRSLYNRLISGDDGVSDSARPITNRIRNWGLRLAQSIRNPSRRFGSGYEPVPVPKGQLAVYVGQKGDGSGDVC RRVLVPVIYINHPLFGELLKGAQEEYGFDQKGGITIPCPFREFERVKTRIDAGSAGSSTRRR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G45210			SAUR-like auxin-responsive pro...		Lus10030295 [exp]	0	1
AT4G04955		ATALN	allantoinase (.1)		Lus10025648 [exp]	12.0	0.6545
AT4G05000		VPS28-2, VPS28-...	vacuolar protein sorting-assoc...		Lus10011243 [exp]	23.2	0.6483
AT5G64550			loricrin-related (.1)		Lus10019307 [exp]	26.4	0.6518
AT1G07350		SR45a	serine/arginine rich-like prot...		Lus10040705 [exp]	51.3	0.5807
AT3G01910		AT-SO, ATSO, SO...	sulfite oxidase (.1.2.3)		Lus10041560 [exp]	64.0	0.6074
AT1G30800			Fasciclin-like arabinogalactan...		Lus10023390 [exp]	72.1	0.5526
AT3G23000		PKS7, ATSRPK1, ...	SNF1-RELATED PROTEIN KINASE 3....		Lus10021892 [exp]	139.5	0.5453
AT3G23160			Protein of unknown function (D...		Lus10021210 [exp]	205.1	0.5249

Compare expression of checked genes

Lus10030295 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.