Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G55005 327 / 2e-113 TON1B tonneau 1b (TON1b) (.1) AT3G55000 322 / 7e-112 TON1A TONNEAU 1A, TONNEAU 1, tonneau family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10001983 [exp] 408 / 2e-145 AT3G55000 359 / 3e-126 TONNEAU 1A, TONNEAU 1, tonneau family protein (.1) Lus10023478 [exp] 356 / 2e-125 AT3G55005 340 / 4e-119 tonneau 1b (TON1b) (.1) Lus10040360 [exp] 337 / 2e-117 AT3G55005 327 / 1e-113 tonneau 1b (TON1b) (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G046000 [exp] 383 / 8e-136 AT3G55005 370 / 1e-130 tonneau 1b (TON1b) (.1) Potri.010G215500 [exp] 382 / 2e-135 AT3G55005 357 / 2e-125 tonneau 1b (TON1b) (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10030297 pacid=23153178 polypeptide=Lus10030297 locus=Lus10030297.g ID=Lus10030297.BGIv1.0 annot-version=v1.0 ATGGACGATTACACGAGAGAGATGATGGACCTCAAGACCCTCGTCACTCGAACACTTGAGAAGAAAGGCGTTCTCGCTAAGATCCGGGCGGAACTTAGAG CAAGCGTCTTTGAAGCAATTGAAGAGGAGGATAGAGTCATTGAAAATGATGAAGGATTGCCGCCTGCATTACTGGGTAGCTGCAATGACCGTGCAAAACA ACTCCATGCCTCGCCTTCAGGGAGGTTATTAACTGCATTAATTTGCGAGTACATGGACTGGGCACAACTAAATCACACATTAAAGGTCTATCAACCAGAG TGCAACTTGCAAAAGGATTCTTGGAAAACAGAGTTAAATGAATTCAGTAGCAAGAATGGGTACGATCTCAACAGGAATGGAGACAGTGGTCCTTTGCTTC TCGATGTACTCGAAGGATTCTTGAAGTATGAGAATCTAACTCAAGGTAGGAGCTCAGGGAGGAGAGTGTCAGAAAATGAGTCCTCATCTAACTTAGAATC AAGGAATATGCGGAGGCCCCCTTCATCATCTGTGGCTAGTGGTTTACCTCCCCTAGGAAGGCCGGGCGCATCTTCCTCGTCTGACAGGAGAGCAGGGTCC TCCATGAGTGGTTACAGAAAAGATGACTACAACTGGAGGTATGATAGTGATGAGTATCCTGATGATGTAAATCGTGCTGCAGCTGAAATTGAGAACCTTC AGTTGGACAGTAAAGCACGGAATCTAACATCATACTGGCGGCATGCTGATGGGATGGGGGATGATGATGGAAGGAGCGATCATATCTGA
AA sequence Show only first row Show all	>Lus10030297 pacid=23153178 polypeptide=Lus10030297 locus=Lus10030297.g ID=Lus10030297.BGIv1.0 annot-version=v1.0 MDDYTREMMDLKTLVTRTLEKKGVLAKIRAELRASVFEAIEEEDRVIENDEGLPPALLGSCNDRAKQLHASPSGRLLTALICEYMDWAQLNHTLKVYQPE CNLQKDSWKTELNEFSSKNGYDLNRNGDSGPLLLDVLEGFLKYENLTQGRSSGRRVSENESSSNLESRNMRRPPSSSVASGLPPLGRPGASSSSDRRAGS SMSGYRKDDYNWRYDSDEYPDDVNRAAAEIENLQLDSKARNLTSYWRHADGMGDDDGRSDHI

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G55005		TON1B	tonneau 1b (TON1b) (.1)		Lus10030297 [exp]	0	1
AT3G25680			unknown protein		Lus10021714 [exp]	1.0	0.8867
AT5G27430			Signal peptidase subunit (.1)		Lus10040138 [exp]	2.0	0.8660
AT1G76860			Small nuclear ribonucleoprotei...		Lus10026326 [exp]	4.6	0.8626
AT2G33735			Chaperone DnaJ-domain superfam...		Lus10014901 [exp]	5.5	0.8492
AT2G39170			unknown protein		Lus10017465 [exp]	9.2	0.8071
AT3G01660			S-adenosyl-L-methionine-depend...		Lus10003648 [exp]	9.7	0.8260
AT5G44200		ATCBP20, CBP20	CAP-binding protein 20 (.1.2)		Lus10039887 [exp]	10.9	0.8471
AT5G62140			unknown protein		Lus10038887 [exp]	13.6	0.8377
AT5G41480		EMB9, ATDFA, GL...	GLOBULAR ARREST1, EMBRYO DEFEC...		Lus10014939 [exp]	14.1	0.8552
AT3G09860			unknown protein		Lus10001400 [exp]	14.4	0.8322

Compare expression of checked genes

Lus10030297 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.