Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G13610 421 / 8e-146 Protein of unknown function (DUF155) (.1) AT1G69380 327 / 1e-109 RRG RETARDED ROOT GROWTH, Protein of unknown function (DUF155) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10001978 [exp] 646 / 0 AT5G13610 457 / 4e-160 Protein of unknown function (DUF155) (.1) Lus10036803 [exp] 333 / 6e-112 AT1G69380 479 / 4e-170 RETARDED ROOT GROWTH, Protein of unknown function (DUF155) (.1) Lus10037127 [exp] 295 / 3e-97 AT1G69380 415 / 2e-145 RETARDED ROOT GROWTH, Protein of unknown function (DUF155) (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G045200 [exp] 508 / 3e-180 AT5G13610 436 / 5e-152 Protein of unknown function (DUF155) (.1) Potri.010G216300 [exp] 475 / 5e-167 AT5G13610 424 / 3e-147 Protein of unknown function (DUF155) (.1) Potri.010G162500 [exp] 343 / 4e-116 AT1G69380 511 / 0.0 RETARDED ROOT GROWTH, Protein of unknown function (DUF155) (.1) Potri.008G092400 [exp] 342 / 1e-115 AT1G69380 505 / 2e-180 RETARDED ROOT GROWTH, Protein of unknown function (DUF155) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF02582 [flax] [poplar] DUF155 Uncharacterised ACR, YagE family COG1723
Representative CDS sequence Show only first row Show all	>Lus10030300 pacid=23153133 polypeptide=Lus10030300 locus=Lus10030300.g ID=Lus10030300.BGIv1.0 annot-version=v1.0 ATGTTGCGCTCGATTGATTCTCGCCTCAGAACCGTCCGACTTCCTCTCCGTACGCTTCTTTCCCTTTCCCCGAACCCTAATTCCACACTCCATCATCTTC CTCTCCCTCACCTCACTCCTCTCTCCGATTCCCGCTCCTTCAAGACCTTCGCCGCCGTTTGCTCCGCTGCTTCCTCTTCTCCCGCTCTCGCTTTCTACGA TGGCAGCCGCCTCACTCCTGTTCTCGGTACTGGGAGGTGGTGCCATGGAACTGCCAGGTGCGTGTCTTCGCTCTCTTCCTCGCTACCGCAACAGCAGCAG CAGGAGCCGAATACTTGGAATGAGCCGGTATCGTGCTCTGTGGTTGGAGATGGCACGGCAGCAGTCGAAGATGGAGGTGATACCATGGAGGAGGATCCCA AGCCAGCCATTCCTGTCCGTTCTTGTATCTTCTCTACTAGTGTGGATTTGAAGAGCTTAGTGGAACAAAACAAGCCCAACTTTGTCCCGCCCACTTCTCG TATGACTAATTATGTTCTTCTCAAGTTTGGGGATCTATCAGTATCAAGTGGCTCTGGTACTTGTATAAGCGGAAGTGATTGCTGTTACATGGTGGTGTTT CAATATGGATCAATCGTCTTGTTTAATGCCCGTGAACAAGAAGTGGATGGTTACATAAAAATCGTTAAGATTCATGCTTCCGGTTTGCTTCCTGATATGA GAAAGGATGAGTATGAGGTGAGGGAGAAGCCAACTCTTGACACTTGGATGGAAGCTGGATTGGATCATATAATGTTGCAGTATTTAAACATTGATGGCAT TCGTACAATTGGTAGCGTCCTTGGCCAAAGCATTGCTCTTGACTACTATGGACGTCAGGTTGATGGAATGGTTGCTGATATCACTGACATTAACCGCGGG ATGGAGAAAACTGGAACATTTTCCATGGACAGTAAAAAGCTTTTCCAATTAGTTGGCAAAGCTAATTCCAATCTTGCGGACATCATTCTTAAGCTAGGTC TTTTCGAGAGATCGGATATTGCATGGAAAGATGCTAAATACGGTCAGATATGGGAATACCTGAGAGACGAGTTTGAACTAACTCAGAGGTTTGCCAGTCT GGATTTTAAGTTGAAGTTTGTGGAGCACAATATCCGGTTCCTACAGGAAATTCTGCAGAACAGGAAATCAGACTTTCTGGAATGGCTAATCATCGTGTTG ATTAGTGTTGAAATAGTGATTTCTGTGTTTGACATTTCACACAGGTCCGGATTGAATTTGATATAG
AA sequence Show only first row Show all	>Lus10030300 pacid=23153133 polypeptide=Lus10030300 locus=Lus10030300.g ID=Lus10030300.BGIv1.0 annot-version=v1.0 MLRSIDSRLRTVRLPLRTLLSLSPNPNSTLHHLPLPHLTPLSDSRSFKTFAAVCSAASSSPALAFYDGSRLTPVLGTGRWCHGTARCVSSLSSSLPQQQQ QEPNTWNEPVSCSVVGDGTAAVEDGGDTMEEDPKPAIPVRSCIFSTSVDLKSLVEQNKPNFVPPTSRMTNYVLLKFGDLSVSSGSGTCISGSDCCYMVVF QYGSIVLFNAREQEVDGYIKIVKIHASGLLPDMRKDEYEVREKPTLDTWMEAGLDHIMLQYLNIDGIRTIGSVLGQSIALDYYGRQVDGMVADITDINRG MEKTGTFSMDSKKLFQLVGKANSNLADIILKLGLFERSDIAWKDAKYGQIWEYLRDEFELTQRFASLDFKLKFVEHNIRFLQEILQNRKSDFLEWLIIVL ISVEIVISVFDISHRSGLNLI

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G13610			Protein of unknown function (D...		Lus10030300 [exp]	0	1
AT1G71420			Tetratricopeptide repeat (TPR)...		Lus10009437 [exp]	1.0	0.8251
AT3G55080			SET domain-containing protein ...		Lus10040345 [exp]	30.4	0.7475
AT3G14400		UBP25	ubiquitin-specific protease 25...		Lus10013726 [exp]	35.0	0.7454
AT3G63510			FMN-linked oxidoreductases sup...		Lus10016405 [exp]	48.7	0.7656
AT1G79560		EMB36, EMB156, ...	EMBRYO DEFECTIVE 36, EMBRYO DE...		Lus10031169 [exp]	56.9	0.7670
AT5G01590			unknown protein		Lus10022672 [exp]	58.4	0.7657
AT1G59990		RH22, EMB3108	RNA helicase 22, EMBRYO DEFECT...		Lus10010711 [exp]	59.2	0.7597
AT5G18820		Cpn60alpha2, EM...	embryo defective 3007, chapero...		Lus10038352 [exp]	63.8	0.7479
AT1G79050			recA DNA recombination family ...		Lus10026204 [exp]	67.7	0.7418
AT1G28530			unknown protein		Lus10015294 [exp]	73.3	0.7399

Compare expression of checked genes

Lus10030300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.