Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G39290 293 / 3e-100 PGP1, PGS1, PGPS1 phosphatidylglycerolphosphate synthase 1 (.1) AT3G55030 280 / 8e-96 PGPS2 phosphatidylglycerolphosphate synthase 2 (.1) AT4G04870 56 / 6e-09 CLS cardiolipin synthase (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10001977 [exp] 412 / 3e-148 AT2G39290 310 / 1e-106 phosphatidylglycerolphosphate synthase 1 (.1) Lus10023471 [exp] 327 / 3e-112 AT2G39290 332 / 2e-113 phosphatidylglycerolphosphate synthase 1 (.1) Lus10040348 [exp] 303 / 2e-102 AT2G39290 301 / 3e-100 phosphatidylglycerolphosphate synthase 1 (.1) Lus10007662 [exp] 49 / 7e-07 AT4G04870 304 / 1e-103 cardiolipin synthase (.1) Lus10018349 [exp] 49 / 1e-06 AT1G61850 1781 / 0.0 phospholipases;galactolipases (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G046700 [exp] 303 / 4e-103 AT3G55030 316 / 5e-108 phosphatidylglycerolphosphate synthase 2 (.1) Potri.010G214900 [exp] 295 / 6e-102 AT3G55030 312 / 1e-108 phosphatidylglycerolphosphate synthase 2 (.1) Potri.004G018300 [exp] 55 / 1e-08 AT4G04870 351 / 1e-120 cardiolipin synthase (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF01066 [flax] [poplar] CDP-OH_P_transf CDP-alcohol phosphatidyltransferase
Representative CDS sequence Show only first row Show all	>Lus10030301 pacid=23153044 polypeptide=Lus10030301 locus=Lus10030301.g ID=Lus10030301.BGIv1.0 annot-version=v1.0 ATGGGATCCGATCATAATCATATTAACAACAACAACAACAGCAACAAGCTCTCCCCCGCCGTTAACGGTTTCGATCAGCCGTCCCGCGATCATCACAATC ACAAGCACCAATGCTCCACCAAGTTGCTCACCTTGCCTACCATTTTGACCCTCGGCCGCGTTGCCTCCGTCCCGCTTCTTATCTTCACCTTTTACATGGA CACTTGGCTGGGAAGAACTGCTACGACCAGTATTTTTGTTGCTGCAGCGGTTACGGATTGGCTTGATGGATACATTGCACGCAGGATGAGGTTAGGATCT GCCTTCGGTGCATTTTTGGACCCTGTAGCTGACAAGTTGATGGTTGCTGCCACCTTGGTCCTCTTGTGTACTCGACCCTTGGATTTTCCAATGTTTGGAT CTGTATCATGGCTACTCACTGTTCCTTCAATTGCTATCATTGGCCGGGAGATAACAATGTCTGCTGTCAGAGAATGGGCTGCTTCACAAAGTACAAAGCT TCTTGAGGCTGTTGCTGTAAACAACTTGGGGAAATGGAAAACCGCGACACAGATGACTGCATTAACCATTCTGCTTGCTACCCGAGATGGAGGTGGTGGA AGTCCTGCGGCATTGGTAGCTTCTGGTGCAATTTTGCTGTATATTTCAGCAGGTCTCTCTGTGTGGTCTTTGGCTGTGTATATGAGTAAGATATGGAAAG TACTCCTCAAGTAG
AA sequence Show only first row Show all	>Lus10030301 pacid=23153044 polypeptide=Lus10030301 locus=Lus10030301.g ID=Lus10030301.BGIv1.0 annot-version=v1.0 MGSDHNHINNNNNSNKLSPAVNGFDQPSRDHHNHKHQCSTKLLTLPTILTLGRVASVPLLIFTFYMDTWLGRTATTSIFVAAAVTDWLDGYIARRMRLGS AFGAFLDPVADKLMVAATLVLLCTRPLDFPMFGSVSWLLTVPSIAIIGREITMSAVREWAASQSTKLLEAVAVNNLGKWKTATQMTALTILLATRDGGGG SPAALVASGAILLYISAGLSVWSLAVYMSKIWKVLLK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G39290		PGP1, PGS1, PGP...	phosphatidylglycerolphosphate ...		Lus10030301 [exp]	0	1
AT4G19180			GDA1/CD39 nucleoside phosphata...		Lus10037285 [exp]	1.0	0.8902
AT2G29630		PY, THIC	PYRIMIDINE REQUIRING, thiaminC...		Lus10018211 [exp]	3.2	0.8728
AT1G49470			Family of unknown function (DU...		Lus10023842 [exp]	3.5	0.8676
AT1G80530			Major facilitator superfamily ...		Lus10041962 [exp]	9.0	0.8725
AT4G17960			unknown protein		Lus10040087 [exp]	9.6	0.8231
AT1G03070			Bax inhibitor-1 family protein...		Lus10004077 [exp]	13.4	0.8034
AT4G11090		TBL23	TRICHOME BIREFRINGENCE-LIKE 23...		Lus10032367 [exp]	13.7	0.8533
AT4G35550	HD	HB-4, WOX13, AT...	WUSCHEL related homeobox 13 (....		Lus10023561 [exp]	15.1	0.8261
AT2G36330			Uncharacterised protein family...		Lus10002372 [exp]	16.1	0.8512
AT2G32300		UCC1	uclacyanin 1 (.1)		Lus10010484 [exp]	16.4	0.8565

Compare expression of checked genes

Lus10030301 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.