Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G12620 565 / 0 Protein phosphatase 2C family protein (.1.2) AT3G55050 545 / 0 Protein phosphatase 2C family protein (.1.2) AT3G51370 492 / 7e-175 Protein phosphatase 2C family protein (.1.2) AT4G38520 492 / 1e-174 Protein phosphatase 2C family protein (.1.2) AT5G66080 473 / 1e-167 Protein phosphatase 2C family protein (.1) AT5G02760 446 / 5e-157 Protein phosphatase 2C family protein (.1) AT3G17090 364 / 1e-124 Protein phosphatase 2C family protein (.1.2) AT4G33920 345 / 6e-117 Protein phosphatase 2C family protein (.1) AT5G06750 337 / 6e-114 Protein phosphatase 2C family protein (.1.2.3) AT3G16560 136 / 1e-35 Protein phosphatase 2C family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10023470 [exp] 653 / 0 AT3G12620 612 / 0.0 Protein phosphatase 2C family protein (.1.2) Lus10040346 [exp] 652 / 0 AT3G12620 616 / 0.0 Protein phosphatase 2C family protein (.1.2) Lus10001976 [exp] 632 / 0 AT3G12620 524 / 0.0 Protein phosphatase 2C family protein (.1.2) Lus10041861 [exp] 514 / 0 AT3G51370 630 / 0.0 Protein phosphatase 2C family protein (.1.2) Lus10027825 [exp] 479 / 2e-169 AT4G38520 586 / 0.0 Protein phosphatase 2C family protein (.1.2) Lus10005054 [exp] 475 / 5e-168 AT4G38520 582 / 0.0 Protein phosphatase 2C family protein (.1.2) Lus10025076 [exp] 465 / 8e-164 AT4G38520 609 / 0.0 Protein phosphatase 2C family protein (.1.2) Lus10024008 [exp] 464 / 9e-164 AT4G38520 605 / 0.0 Protein phosphatase 2C family protein (.1.2) Lus10003993 [exp] 452 / 2e-159 AT3G12620 483 / 1e-171 Protein phosphatase 2C family protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G214700 [exp] 610 / 0 AT3G12620 542 / 0.0 Protein phosphatase 2C family protein (.1.2) Potri.008G046900 [exp] 604 / 0 AT3G12620 543 / 0.0 Protein phosphatase 2C family protein (.1.2) Potri.005G108500 [exp] 517 / 0 AT3G51370 646 / 0.0 Protein phosphatase 2C family protein (.1.2) Potri.009G137400 [exp] 507 / 2e-180 AT4G38520 657 / 0.0 Protein phosphatase 2C family protein (.1.2) Potri.004G177100 [exp] 504 / 2e-179 AT4G38520 608 / 0.0 Protein phosphatase 2C family protein (.1.2) Potri.007G061100 [exp] 503 / 8e-179 AT3G51370 590 / 0.0 Protein phosphatase 2C family protein (.1.2) Potri.016G082800 [exp] 489 / 6e-174 AT3G12620 502 / 4e-179 Protein phosphatase 2C family protein (.1.2) Potri.008G104300 [exp] 394 / 2e-136 AT3G17090 568 / 0.0 Protein phosphatase 2C family protein (.1.2) Potri.010G146700 [exp] 385 / 1e-132 AT3G17090 554 / 0.0 Protein phosphatase 2C family protein (.1.2) Potri.016G045600 [exp] 369 / 2e-126 AT5G06750 578 / 0.0 Protein phosphatase 2C family protein (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0238 [flax] [poplar] PP2C PF00481 [flax] [poplar] PP2C Protein phosphatase 2C
Representative CDS sequence Show only first row Show all	>Lus10030302 pacid=23153203 polypeptide=Lus10030302 locus=Lus10030302.g ID=Lus10030302.BGIv1.0 annot-version=v1.0 ATGATGGTTTCAACTACAGTTATGAGAATCGTTTCAAACTGCTGGAGGCCTTCAGTAGAGGGAGAATCTAATAGAGGTGGAGATGCCAGTGGCCGTGCTG ATGGGTTGTTGTGGTATAAAGATTCCGGAAGGCATGTGAATGGGGAGTTTTCAATGGCATTAATTCAAGCGAATAATCTACTTGAAGATCAAAGCCAACT TGAATCTGGGCCAATGAGCTCTCTTGAATCAGGTCCTCAAGGTACATTCGTGGGAGTTTATGATGGTCATGGAGGTCCAGAAGCTGCTCGGTTTGTAAAT GAACGCCTTTTTGACAATATTAAGAAATTTACAAGTGAGAGTCGAGAAATGTCAAGTGATGTCATCACCAAAGCCTTTTTGGCTACAGACGAGGAGTTCC TTTCTCTAGTGAAGAACCAGTGGCTAAATAAGCCACAAATTGCTTCTGTTGGAGCATGTTGTTTAGTAGGTGTAGTATGTAGTGGACTTCTATACATTGC AAATGCTGGTGATTCTCGGGCGGTATTAGGAAGACTGGAAAAAACCATGAAGGAAGTTAAGGCCATTCAGTTATCTTCAGAACACAATGCAAGTATAGAA TCCGTGAGAGACGAGTTGCAAGCATTACATCCCGACGATCCCCACATCGTGGTTTTAAAACACAAGGTTTGGCGCGTAAGGGGCCTTATCCAGGTGTCTC GATCACTAGGTGATGCATACCTGAAGCGAGTAGAATTTAACAGAGAGCCTCTGTTGGCAAAGTTCAGATTGCCAAATCCGTTTGAAAGACCAATCCTGTT GGCGGAGCCAGCAATCACAGTGCAAAGACTGATTCCTCAGGATCTATTTCTTATTTTTGCATCAGACGGCCTTTGGGAGCATCTGACCAACCAAGAGGCA GTTGACATTGTTCATAATTGTCCCCGAAATGGCGTGGCAAGGAAGCTACTAAAGGCTGCACTCCATGAAGCAGCAAAGAAGAGGGAAATGAGATACTCAG ACTTGAAAAAAATCGATCGTGGGGTGAGGAGACATTTTCACGACGACATCACAGTGATAGTTCTGTTCCTGGATTCACTTACTATCAGCCACAGCAGAAG TCTGCGAGTCTCGATCAGAGGAGGAGGGGGTGTGCCTAGAACATAG
AA sequence Show only first row Show all	>Lus10030302 pacid=23153203 polypeptide=Lus10030302 locus=Lus10030302.g ID=Lus10030302.BGIv1.0 annot-version=v1.0 MMVSTTVMRIVSNCWRPSVEGESNRGGDASGRADGLLWYKDSGRHVNGEFSMALIQANNLLEDQSQLESGPMSSLESGPQGTFVGVYDGHGGPEAARFVN ERLFDNIKKFTSESREMSSDVITKAFLATDEEFLSLVKNQWLNKPQIASVGACCLVGVVCSGLLYIANAGDSRAVLGRLEKTMKEVKAIQLSSEHNASIE SVRDELQALHPDDPHIVVLKHKVWRVRGLIQVSRSLGDAYLKRVEFNREPLLAKFRLPNPFERPILLAEPAITVQRLIPQDLFLIFASDGLWEHLTNQEA VDIVHNCPRNGVARKLLKAALHEAAKKREMRYSDLKKIDRGVRRHFHDDITVIVLFLDSLTISHSRSLRVSIRGGGGVPRT

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G12620			Protein phosphatase 2C family ...		Lus10030302 [exp]	0	1
AT1G01350	C3HZnF		Zinc finger (CCCH-type/C3HC4-t...		Lus10009810 [exp]	3.6	0.8815
AT5G37370		ATSRL1	PRP38 family protein (.1.2.3.4...		Lus10010963 [exp]	4.0	0.8400
AT5G16790		AtTHO7	Tho complex subunit 7/Mft1p (....		Lus10030532 [exp]	4.1	0.8397
AT5G62020	HSF	AT-HSFB2A	ARABIDOPSIS THALIANA HEAT SHOC...		Lus10014994 [exp]	4.7	0.8698
AT4G25680			PPPDE putative thiol peptidase...		Lus10014960 [exp]	9.7	0.8393
AT1G36310			S-adenosyl-L-methionine-depend...		Lus10023545 [exp]	11.6	0.8614
AT3G12830			SAUR-like auxin-responsive pro...		Lus10031754 [exp]	12.4	0.8145
AT3G50880			DNA glycosylase superfamily pr...		Lus10041749 [exp]	13.0	0.8385
AT4G25030			unknown protein		Lus10033276 [exp]	21.5	0.8085
AT1G61620			phosphoinositide binding (.1)		Lus10018409 [exp]	24.6	0.8614

Compare expression of checked genes

Lus10030302 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.