Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G08790 474 / 2e-170 Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase family protein (.1) AT5G12040 146 / 3e-41 Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase family protein (.1.2) AT2G27450 92 / 1e-21 CPA, ATNLP1, NLP1 nitrilase-like protein 1 (.1.2) AT3G44310 77 / 7e-16 NITI, NIT1, ATNIT1 A. THALIANA NITRILASE 1, nitrilase 1 (.1.2.3) AT3G44300 75 / 3e-15 AtNIT2, NIT2 nitrilase 2 (.1) AT3G44320 75 / 3e-15 AtNIT3, NIT3 nitrilase 3 (.1) AT5G22300 54 / 4e-08 AtNIT4, NIT4 nitrilase 4 (.1) AT5G64370 50 / 6e-07 PYD3, BETA-UP PYRIMIDINE 3, beta-ureidopropionase (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10001975 [exp] 576 / 0 AT4G08790 469 / 6e-168 Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase family protein (.1) Lus10026464 [exp] 141 / 2e-39 AT5G12040 526 / 0.0 Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase family protein (.1.2) Lus10020627 [exp] 96 / 9e-23 AT2G27450 556 / 0.0 nitrilase-like protein 1 (.1.2) Lus10004862 [exp] 83 / 5e-18 AT2G27450 531 / 0.0 nitrilase-like protein 1 (.1.2) Lus10005201 [exp] 64 / 3e-11 AT5G22300 559 / 0.0 nitrilase 4 (.1) Lus10013313 [exp] 56 / 9e-09 AT5G22300 561 / 0.0 nitrilase 4 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G047100 [exp] 519 / 0 AT4G08790 465 / 3e-166 Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase family protein (.1) Potri.010G214600 [exp] 514 / 0 AT4G08790 474 / 8e-170 Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase family protein (.1) Potri.006G222900 [exp] 142 / 6e-40 AT5G12040 479 / 5e-170 Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase family protein (.1.2) Potri.004G201400 [exp] 93 / 9e-22 AT2G27450 548 / 0.0 nitrilase-like protein 1 (.1.2) Potri.016G074200 [exp] 56 / 1e-08 AT5G22300 358 / 1e-121 nitrilase 4 (.1) Potri.004G199600 [exp] 55 / 1e-08 AT5G22300 578 / 0.0 nitrilase 4 (.1) Potri.007G115900 [exp] 44 / 8e-05 AT5G64370 720 / 0.0 PYRIMIDINE 3, beta-ureidopropionase (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00795 [flax] [poplar] CN_hydrolase Carbon-nitrogen hydrolase
Representative CDS sequence Show only first row Show all	>Lus10030303 pacid=23153084 polypeptide=Lus10030303 locus=Lus10030303.g ID=Lus10030303.BGIv1.0 annot-version=v1.0 ATGGCGTCGACGAACTCAGTCCGAGTCGCCGCCGCTCAGATGACTTCCATCAACGACCTCGCTGCCAACTTCGCTACCTGTTCTCGCCTTGTCAAAGAAG CAGCATCTGCTGGGGCGAAATTGCTTTGCTTACCTGAAAGTTTCTCTTACATTGGCGCCAGGGATGGGGACAGTGTTAAGATTGCAGAGCCTCTTGATGG ACCAATTATGAAACAGTATTGCTCCTTGGCAAGAGAGTCAGGAATTTGGCTATCTTTAGGAGGTTTCCAAGAAAGAGGATTTGATGATGCACACTTGTGC AATACCCATGTAATAGTTGATGATGGTGGGAATATCAGAAGCACCTATCGGAAGATACACCTGTTTGATGTGGATGTTCCGGGTGGAAGGGTGTACAAGG AAAGCAGCTTCACAGAAGCTGGAAAAGATATAGTTGCTGTTGACAGTCCTGCCGGACGCTTGGGTTTGACTGTATGCTATGATTTGAGATTTCCTGAGCT TTACCAGCAACTGCGTTTCCAACATGAAGCTCAGATTCTGTTAGTGCCTTCAGCTTTTACAACAATCACCGGTGAGGCACACTGGGAGATTCTTCTTCGT GCTCGTGCAATTGAGACACAATGCTATGTAATAGCTGCAGCACAGGGCGGTAAACACAATGAGAAAAGAGAGAGCCATGGTGAGACATTGATAATTGATC CATGGGGCACAGTAGTAGGCCGATTGCCAGATCGAATTTCAACTGGGATTACTGTGGCCGATATTGATTTCTCGCTCATCGATTCAGTTAGAACAAAATT ACCAATTGCTAAGCAACGCCAGCCTATCGACTTCTGGAAATCTTCATCTATTTGA
AA sequence Show only first row Show all	>Lus10030303 pacid=23153084 polypeptide=Lus10030303 locus=Lus10030303.g ID=Lus10030303.BGIv1.0 annot-version=v1.0 MASTNSVRVAAAQMTSINDLAANFATCSRLVKEAASAGAKLLCLPESFSYIGARDGDSVKIAEPLDGPIMKQYCSLARESGIWLSLGGFQERGFDDAHLC NTHVIVDDGGNIRSTYRKIHLFDVDVPGGRVYKESSFTEAGKDIVAVDSPAGRLGLTVCYDLRFPELYQQLRFQHEAQILLVPSAFTTITGEAHWEILLR ARAIETQCYVIAAAQGGKHNEKRESHGETLIIDPWGTVVGRLPDRISTGITVADIDFSLIDSVRTKLPIAKQRQPIDFWKSSSI

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G08790			Nitrilase/cyanide hydratase an...		Lus10030303 [exp]	0	1
AT4G03260			Outer arm dynein light chain 1...		Lus10039729 [exp]	2.8	0.7228
AT2G44970			alpha/beta-Hydrolases superfam...		Lus10028185 [exp]	4.0	0.6795
AT5G62610	bHLH	bHLH079	basic helix-loop-helix (bHLH) ...		Lus10033120 [exp]	7.5	0.7017
AT3G28050			nodulin MtN21 /EamA-like trans...		Lus10039430 [exp]	12.1	0.6798
AT1G62810			Copper amine oxidase family pr...		Lus10024568 [exp]	12.5	0.7021
AT1G33270			Acyl transferase/acyl hydrolas...		Lus10020983 [exp]	19.6	0.6807
AT1G67570			Protein of unknown function (D...		Lus10006430 [exp]	20.9	0.6970
AT4G16444			unknown protein		Lus10016696 [exp]	21.4	0.6538
AT3G01930			Major facilitator superfamily ...		Lus10032034 [exp]	21.5	0.6304
AT4G11570			Haloacid dehalogenase-like hyd...		Lus10035494 [exp]	25.0	0.7021

Compare expression of checked genes

Lus10030303 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.