Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G55060 481 / 2e-156 unknown protein AT2G39300 350 / 2e-107 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10001974 [exp] 1453 / 0 AT3G55060 655 / 0.0 unknown protein Lus10019883 [exp] 48 / 1e-05 AT2G39300 56 / 8e-09 unknown protein Lus10014034 [exp] 46 / 7e-05 AT2G39300 78 / 4e-16 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G214300 [exp] 697 / 0 AT3G55060 674 / 0.0 unknown protein Potri.008G047200 [exp] 651 / 0 AT3G55060 637 / 0.0 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10030304 pacid=23153194 polypeptide=Lus10030304 locus=Lus10030304.g ID=Lus10030304.BGIv1.0 annot-version=v1.0 ATGAAGAAGTTATTCTTTTTCCGGTCTTCCTCCAACGATGGAAGCAGCAATGCTGGTTCTCCACCTTCAAAAAACGAGAATCGAACAGGGAATGGACTAA GCGATCACAGTGGGGACAAGTCCGAGAGCTATTTCAGAAGTCCAAAGGGCTTGTTTTCCAAGTCAAGAAAGCAAGTTCATGGTAGTCAAAGTCCAAGTTC CAATCCCACTCTACGGAAAAGTCGCTCTTATACATCTGGATCATTTCTACTGGATGACATTGGGCAGTCAAACTTCTCTGTTCCAGTTCAACGTAGTAAA TCTCCTAGCACCTATTCTTCTCGTAGCAGTAGACGTGCTCCTACTCCTCCAAGGCAAGTTCGATCAGAGCAACTTGAAGTATTTGGATTGCAGAGGCATA CTTCTGGTTCGTCCAAGCCTTATCAGGATCGTTCTGGGAGTTCATCATCCAGCAATGCTTCAACTAAGGTTTTGGATCGCTATATAGATGGCGAGGAACA AGAAGAAAGAGGGAGACCCGAAAAAGTTTCTTCTCAGAGATACGTTACCGGGAGTGGTAATCCAGGTGGGAAACTTCCTCCTCGAACCCAATACATAGCC CCTGCTTCACCAACACATCCTGTCAGAGACAAACCCAAGGGTCACTCATTTAGGGAATCTAAACGTATTCATCCCCATTTTTCTTCCAGTGATTGGATGG GAAATGAGTTTGGTCATGGATCTCCCAGGAGACTTGCAAAGAATGTTATTGAGAGACTTGCCCTAACTCATGGTTTCCCTAAATCCAATTCGAAAGAGGT TGATTGCGATATTCCAATCACAATTGAAGATGTTTATGGTGGCTCTCTAAGTAGATGTTTTGACACAAATTCAGATGCTCTACACCAGAACTGTTCTCTG GAAGAGTCATGTGATACTCTTAACAGATATCATGAAGACGATTTCTTGGGATACCAGAGTCAAGAAGTTTTTGGAGGAGAAGATTTCAGGGATATAAAAT CTGCGAAAGCTGAGAATCCAGTTGGTTTGGAACTGGAAAGACGATCAAAAGAAGCTGAGGAGAGGGTTGTAGTTCTGTCTGAAGAACTTGAGCAGGAAAG CTTTCTCCAAAATTTTGGGTTTGATAGTCCGTCATTTGTTCACTTTGTGAAGAACCTAATGGAGGACAGGGTAAGTTTGGCAATTGAGATTTCCGGGCTT CTAAAGTCTCGAATTGTGGAGAGGGATTCTGCCAAGGAAGAAGTTAAATTGGCAAAGACAGAGCAAGAGGCAAAGTGTCTACGATTTGAGAAAGAGAAAA ATGAACTGCAGTCAGCATTGGAGAAAGAGTTAGATAGAAGGTCAAATGATTGGTCATCAAAACTGGAGAAGTACCAACTAGAGGAGCACAGATTGCGTGA GAGGGTCAGAGAACTTGCGGAGCAGAATGTCTCGCTCCAAAGGGAACTCTCTGGCTTCAGTCAAAGAGAGACAGAAAGTAAAAGTGTGTTGACTTATTCA GAGCAACAAGTTAGACAGCTGACTTCAACTGTGCAAGAGTTGACCCAAGAAAACGAACAGTTGCAACAAAACCTTTCTGGGGTTCAGGAGCATTATAGAG CAATTAAACAGGATCTGAATTGTGTCAGAAGAAGCTTTGAAGCTAAGGATAAAGAGTCTAAGGAGTCACAAAAGTCAATTACTAGGCTGTTGCGAACCTG CAGTGAGCAGGAGAAGACAATTATTGGACTGCGGGATGAATTTGGTGCTGAAACGGAGAGGGAGCAATCACCAGGATTACTTGATAAGCATGTAACAAAG TTGCGCATGGAACTAATGAGGTTAACTGGAGTAGAAATGTCACTTAGAAGAGAGGTTGAGAATCAAAGATTTGAAGTTGATTCCCTTCGACATGAAAATA TGAATCTACTGAATCGATTGAAGGGAGTTGGGAATGAGATCCATGCTGTAACTCTTAAACTAGATCAAGAGATGTGGACCCGTCTGTCTTTCCTCCAAAA TCAGGGATTAGCTTTGCTGAATGACAGCACCCAATTGTGCTCCAAGTTGTTGGAGCAACTCAAAGGGAATTCTGGTGAATGTGTAGAAACAGCACATCGG ATGGAGTTCATCAGAAATGGTTTAGATGGGCATTTCATTGTTGAAGCAGATGTAAAAGTTCAGGGTTTTAGGCGTGGAGTTGAGAGCCTAACGAGGAGTT TGCAGTCAGTTGCATCTTTAATGCAGGAAAAGTCAAATCTTGTTGCTCCAACGTGTCAGTCTCCACATTCAAGTGGTGGTGATGCTATGGGAAAGCTAAC ATCAGAGATGTGCAAGAAGGACGAAAATGCAAGTCAGCTTCAACAGGATGTCCAAGAATCTATGAAAGAGATGTCGGTAACGAAGGGGATGCTGCAGAAA GTAACGCAAGAGAGAGACTTGGTGTGGGAGGAAGTGAAGCAGTACAATGAGAAGAACATGCTATTGAACTCAGAGGTAGGTGTGTTGAAGAAGAAGCTAG AGTCTCTCGAGGAAGAAATACTGGTGAAAGAAGGAGAGATCACAATCCTCAAGGACAACTTGCGGAAGAGACCCTTCGACCTCCTCGCTGATCTTGATTC GTCAGAAGGCTTCCTGCTATAG
AA sequence Show only first row Show all	>Lus10030304 pacid=23153194 polypeptide=Lus10030304 locus=Lus10030304.g ID=Lus10030304.BGIv1.0 annot-version=v1.0 MKKLFFFRSSSNDGSSNAGSPPSKNENRTGNGLSDHSGDKSESYFRSPKGLFSKSRKQVHGSQSPSSNPTLRKSRSYTSGSFLLDDIGQSNFSVPVQRSK SPSTYSSRSSRRAPTPPRQVRSEQLEVFGLQRHTSGSSKPYQDRSGSSSSSNASTKVLDRYIDGEEQEERGRPEKVSSQRYVTGSGNPGGKLPPRTQYIA PASPTHPVRDKPKGHSFRESKRIHPHFSSSDWMGNEFGHGSPRRLAKNVIERLALTHGFPKSNSKEVDCDIPITIEDVYGGSLSRCFDTNSDALHQNCSL EESCDTLNRYHEDDFLGYQSQEVFGGEDFRDIKSAKAENPVGLELERRSKEAEERVVVLSEELEQESFLQNFGFDSPSFVHFVKNLMEDRVSLAIEISGL LKSRIVERDSAKEEVKLAKTEQEAKCLRFEKEKNELQSALEKELDRRSNDWSSKLEKYQLEEHRLRERVRELAEQNVSLQRELSGFSQRETESKSVLTYS EQQVRQLTSTVQELTQENEQLQQNLSGVQEHYRAIKQDLNCVRRSFEAKDKESKESQKSITRLLRTCSEQEKTIIGLRDEFGAETEREQSPGLLDKHVTK LRMELMRLTGVEMSLRREVENQRFEVDSLRHENMNLLNRLKGVGNEIHAVTLKLDQEMWTRLSFLQNQGLALLNDSTQLCSKLLEQLKGNSGECVETAHR MEFIRNGLDGHFIVEADVKVQGFRRGVESLTRSLQSVASLMQEKSNLVAPTCQSPHSSGGDAMGKLTSEMCKKDENASQLQQDVQESMKEMSVTKGMLQK VTQERDLVWEEVKQYNEKNMLLNSEVGVLKKKLESLEEEILVKEGEITILKDNLRKRPFDLLADLDSSEGFLL

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G55060			unknown protein		Lus10030304 [exp]	0	1
AT5G17410			Spc97 / Spc98 family of spindl...		Lus10026855 [exp]	2.0	0.9032
AT5G37020	ARF	ARF8, ATARF8	auxin response factor 8 (.1.2)		Lus10020804 [exp]	4.7	0.8843
AT5G55470		ATNHX3	Na+/H+ \(sodium hydrogen\) exc...		Lus10014891 [exp]	6.0	0.8547
AT2G37300		ABCI16	ATP-binding cassette I16, unkn...		Lus10025272 [exp]	7.1	0.8734
AT3G19510	HD	HAT3.1	Homeodomain-like protein with ...		Lus10024826 [exp]	7.3	0.8821
AT2G23140			RING/U-box superfamily protein...		Lus10022919 [exp]	8.9	0.8670
AT3G63430			unknown protein		Lus10003090 [exp]	11.4	0.8789
AT3G58640			Mitogen activated protein kina...		Lus10020708 [exp]	12.4	0.8734
AT5G48040			Ubiquitin carboxyl-terminal hy...		Lus10011327 [exp]	12.4	0.8698
AT5G61460		SMC6B, ATRAD18,...	STRUCTURAL MAINTENANCE OF CHRO...		Lus10038928 [exp]	13.4	0.8733

Compare expression of checked genes

Lus10030304 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.