Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G39340 870 / 0 AtSAC3A yeast Sac3 homolog A, SAC3/GANP/Nin1/mts3/eIF-3 p25 family (.1) AT3G55070 644 / 0 LisH/CRA/RING-U-box domains-containing protein (.1.2) AT4G37880 108 / 7e-25 LisH/CRA/RING-U-box domains-containing protein (.1) AT5G09630 99 / 2e-21 LisH/CRA/RING-U-box domains-containing protein (.1) AT2G22690 97 / 6e-21 zinc ion binding (.1.2) AT3G06290 55 / 5e-07 AtSAC3B yeast Sac3 homolog B, SAC3/GANP/Nin1/mts3/eIF-3 p25 family (.1) AT1G06060 49 / 6e-06 LisH and RanBPM domains containing protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10001973 [exp] 1328 / 0 AT2G39340 914 / 0.0 yeast Sac3 homolog A, SAC3/GANP/Nin1/mts3/eIF-3 p25 family (.1) Lus10020487 [exp] 110 / 2e-25 AT4G37880 361 / 2e-123 LisH/CRA/RING-U-box domains-containing protein (.1) Lus10002832 [exp] 103 / 3e-23 AT4G37880 407 / 1e-141 LisH/CRA/RING-U-box domains-containing protein (.1) Lus10027883 [exp] 97 / 6e-21 AT4G37880 405 / 2e-140 LisH/CRA/RING-U-box domains-containing protein (.1) Lus10014078 [exp] 89 / 1e-18 AT2G22690 382 / 2e-132 zinc ion binding (.1.2) Lus10019837 [exp] 69 / 7e-12 AT4G37880 399 / 9e-139 LisH/CRA/RING-U-box domains-containing protein (.1) Lus10034008 [exp] 60 / 2e-08 AT3G06290 1093 / 0.0 yeast Sac3 homolog B, SAC3/GANP/Nin1/mts3/eIF-3 p25 family (.1) Lus10012769 [exp] 59 / 3e-08 AT3G06290 1033 / 0.0 yeast Sac3 homolog B, SAC3/GANP/Nin1/mts3/eIF-3 p25 family (.1) Lus10007106 [exp] 50 / 9e-06 AT5G09630 150 / 1e-41 LisH/CRA/RING-U-box domains-containing protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G213700 [exp] 1199 / 0 AT2G39340 845 / 0.0 yeast Sac3 homolog A, SAC3/GANP/Nin1/mts3/eIF-3 p25 family (.1) Potri.008G047700 [exp] 1140 / 0 AT2G39340 880 / 0.0 yeast Sac3 homolog A, SAC3/GANP/Nin1/mts3/eIF-3 p25 family (.1) Potri.008G047300 [exp] 711 / 0 AT3G55070 605 / 0.0 LisH/CRA/RING-U-box domains-containing protein (.1.2) Potri.015G128600 [exp] 121 / 5e-29 AT4G37880 486 / 3e-172 LisH/CRA/RING-U-box domains-containing protein (.1) Potri.012G127300 [exp] 117 / 9e-28 AT4G37880 469 / 1e-165 LisH/CRA/RING-U-box domains-containing protein (.1) Potri.009G080500 [exp] 112 / 3e-26 AT4G37880 419 / 3e-146 LisH/CRA/RING-U-box domains-containing protein (.1) Potri.001G286300 [exp] 112 / 7e-26 AT5G09630 417 / 3e-145 LisH/CRA/RING-U-box domains-containing protein (.1) Potri.010G028200 [exp] 55 / 7e-07 AT3G06290 1155 / 0.0 yeast Sac3 homolog B, SAC3/GANP/Nin1/mts3/eIF-3 p25 family (.1) Potri.010G213950 [exp] 0 / 1 AT3G55070 0 / 1 LisH/CRA/RING-U-box domains-containing protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0123 [flax] [poplar] HTH PF03399 [flax] [poplar] SAC3_GANP SAC3/GANP family
Representative CDS sequence Show only first row Show all	>Lus10030305 pacid=23153049 polypeptide=Lus10030305 locus=Lus10030305.g ID=Lus10030305.BGIv1.0 annot-version=v1.0 ATGGAGATCGATCCAATCCCGAACGGCAACTCCAGCGTCAATTCTGTTTCAACCACCGCGTCACCCATGGTCACTGCACCATCGTCCAACTTGACTCGAT TGACAGAATCATTGAAGCTAGAGCACCAGTTCGTCCGCGTGCCTTTCGAGCACTACAAGAAGACGATCCGCGTCAACCACCGTGCCGTTGAGAAGGAAAT TTCCTCCGTGGTTTCAGGCGTTAATGAAGCTGCCGATTCCGATTTGTCCAAAGACGACGCTGTTGAGCACCTTACTTCCCTCGTCTCCAGATTGCAAGGT CTCAAAAGGAAGCTGGAAGAGGGCAGTCGTACTGAGAACCTGCAAGCACAAAGATGTCGTTCTCGTCTTAACCATTTGGAATCAGCAGATGCAGACAACC TGACAGAATGGAGCAACACTCGTCTCAAACGAATTCTTGTGGACTACATGCTGCGAATGTCTTACTACGACACTGCAATGAAGCTTGCTGAAAGCAGCAA CATTCAGGATCTGGTTGATATTGATGTATTCCAAGAAGCCAGAAGGGTGATCGATGCTCTCCAGAATAAAGAAGTGGCTCCTGCTCTAGCCTGGTGTGCT GACAATAGATCGCGTTTGAAGAAGTCAAAGAGCAAATTCGAGTTCCAGTTGAGACTTCAAGAGTTCATAGAATTGGTGCGGGCTGATAATCATATGCGTG CCATAGCATATGCTCGGAAGTATCTTTCTCCATGGGGAGCTACCCACATGAAAGAATTGCAGAGGGTCATGGCGACTCTGGCTTTCAAAAGTGCTACTGA ATGTGCAACATACAAGGTTCTGTTTGAACCAAAGCAATGGGACTATCTGGTGGGACAATTTAAACAGGAGTTCTTCAAATTATATGGCATGACTCTTGAA CCACTGCTGAATATTTATCTACAGGCTGGGCTATCTGCCTTAAAGACTCCATATTGTTATGAGGAAGATTGCCCAAAAGAGGATCCGCTGTCGCAGGAGA GCTTCCGGAAGTTGGCATTGCCTCTACCATACTCTAAGCAACACCACTCGAAGCTTGTCTGTTACATAACCAAAGAGCTGATGGATACAGAGAACCCGCC TCAAGTCTTACCCAATGGCTATGTCTACAGCACGAAGGCACTGGAAGAGATGGCGAAGAAGAACAACGGTAAGATAACCTGCCCAAGAACAGGTCTTGTC TGCAATTACTCAGAGTTGTGGAGGAGTGAAATGATGATGAATCAAGGAGTTAATACGCAAACTGTGGATCCTGCGGACCCCAACTTGTTCGAGAGTCAAT ATGTACATGATGCAAGCCAGGGACAGGCATCATCATATCTTCCCTCGTCAACTGGTCCAGAAGCAGCTTCATGGACAGTGCATAAGGTAGAAGGTCATCC CTCACAGGACAGAGTGTTAGCAAGTGGAGGTTATCAACATGGTCAGCAATCAGAGCCAGTTGTAAGAAACGTCCAGGATGGCTCGAATGCAACACCCCTT ACCAGTTCATCAACTATTGGAGCAGCTAATGCAGTGCAAGACTACAATAGTTATGCATCATACTCAAATACTACTGAGCCCTACAATTATGGAAGTTCAG CATATCCGGGTTACTACAGTGGTTACCAGCAACAAACTAATAGTACATATTCTCAGCAGCAACCGAACAATGCATATTCTCAGCAGCAACCAAACAATGC ATATCCTCAGCAGCAACCAAACAATGCATATCCTCAGCCGCAACAGAATAATGCGTATTCTGTGCAGCAACCTAACGATTCGTACTCTCAGACTTTTGGA GCTTATCAAAACACAGGTGCTGCTTATCAGCCTAATTCCTCATTTCAGAATACTGGGTCTTATGCTGGGACTGCATCTTATTCAACCACTCACTACAATC CTGGTAATTATCAGACAACAGGAGGTTACTCGAGCAGCGGACACAACAATCAAGTATCTGTTTGGAATAATGGAAATTATGCAAATTATACATCCTACCA GTATCCGAATTACAATTCAGATACTGCAAGTGCATATGGTTCTGGTACAGCGGATACAACTTATCAACAGCCATATAAGCAATGGCCAGACTATTACAGC CAAACAGAAGTGACATGTGCTCCGGGGACTGAACACTTGCCTGTTGCTAGTAACAGCAATCCTGGAAGTGCTGTTCCCAGTACTTGTATCACCAGTGGGT ACTCTACTCCTACCAACCAACCTCAGCCTCCGCTTCAGCATCAGCCTCAGTTTCCACCTCCTACATCCTTCACACCTACTTGGAGGCCAGAAACCAAATC ATCTGAACTGCCTTCTGTACAGCCTGAAGGAGCAGCTAGTGGTGCTCATGATAACTACTGGAACCAGCCAGCTCCAACTTTTCAAACCCACCTTGCTACT CCTGTTCAGCCACAATATCAAAACTCTATAGACTCAAAAACTATTTATGAAAATTTTCAGGAACAGATGACTGCTCCTCAAGGATCTAATTCCCAATATC CTGTTGCTCATCAGGTGTCCAAGAGTTATCCGTCCACTTTACAAAATGTGTCATCATTTGACACACAGAGGGTAAACAATTTGCAGATTCCGACAAATCC TAGAATTGCTTCAAATGCAGCTATCGGTTTTGCAAAAACAGATAAGAGTAGATTTGCAACCAATTCAGCTCCGAGACCAGCTTACGTTAGTGTCCCTCTG CCGAAGACACATGACAAGGTGTCGTCAAATAGTGCAGCTGATCCCATGTTGAAGCCTACCATGTTCCCGAAGTCGTTATGTGGATATGTTGAGAGAGCTT TGGGGCGACATAAAGATGATGATGTTAGAAGGGCAGCTTGTGAAGCAGTCATGAAGGAGATCATCACCAAGGCGACTGCTGATGGTACACTTTATACCAA AGACTGGGATAGTGAGCCTCTTTTCACAGTACCAGATCCACATTTCATGAATAAGGAAAATCTACATTATTCAACTCCTGTCACCACACCAAATTATAGG AAGAGTCCAAATAGGCGGTCTAAGAGTAGATGGGAGCCTTTGCCGGAGGAGAAGATGCCAGAAGTACCTGTTTCTTCGAGTAATGACACAATAAAATATG ATAATTGGGACAGAAAGGCTTTCAGTGGCTATTCTGCCGCCAAAGGTAATACGGCTTTCAACAATTTCAAATATTCTGCATCACAACAGAAAACTCCTGG TAAAAGTGCACAGAGGCCGACCAAGAGGCAACGTGTTAATGACACAGTTTTTACTAATAACGAAGACGGGTCAAGTGGCAGTGACAAAGAGCAAAGTTTG ACTGCATATTACTCTGGTGCAATGGCATTGGCTAATAATCCAGATGAAAAAAAGAAACGAGAAAGTAGATGTAAGCGTTTTGAGAAAGGCCAAGGACATC GTCCTGATATTAATTATTTCAGACCAAAAAATGCTGGTCCTGCAAATGTGCTGTATAGCAGAAGAGCTAGTGCCATGGTGCTTAGTAAGAGCTTTGATGA CAGTGTAAACCAAGCTGTTGAAGACATTGACTGGGATGCACTCACGGTTAAAGGAACTTGTCAACAGATTGAAAAACGATTTTTGCGTCTCACTTCTGCA CCTGACCCTTCTACTGTCAGACCAGAAGATGTGCTAGAGAAAGCTTTATTAATGGTTCAGAATTCGGAAAAGAACTATCTTTTTAAATGTGATCAATTGA AATCTATTCGTCAAGATCTTACTGTACAGAGGATAAGGAATCACTTAACAGTTAAGGTATATGAAACACATGCTAGATTAGCAGTGGAAGTTGGGGACTT GGCTGAGTATAATCAGTGCCAGTCACAGTTACAGATCCTCTACTGTGAAGGAATTGAAGGTTGTATCATGGAGTTTGCGGCTTACAACTTGCTTTGTGTC ATCTTGCACTCTAATAACAAGAGGGATCTTTTGTCATCAATGTCTAGATTAACACAAGAAGCAAAAGAAGATGAAGCAGTGAAACATGCTCTTGCGGTTA TTGCTGCTGTGACTTCCGGAAATTATGTTACGTTCTTCAAACTATACAAGACTGCTCCCAACTTGAACACTTGCTTGATGGATCTTTACGTGGAAAAGAT GCGGTACAAGGCTGTGGTCTGCATGTCTCGGTCATATCGCCCAACGATACCAATTTTATATATTGCACAGATGTTAGGATTCTCTGGTGCAGCGGAAGGA AATGGGGAGACGGACTCGAGTGGTTTTGAGGAATGCTTAGAATGGTTGAAGGCCCATGGTGCTAGCCTGACCGCTGACAACAATGAAGTCGATGCTAAGG CGTCTTCTTCTACTCTATTCATGCCGGAACCTGAAGATGCGGTTGCTCATGGAGACTCCAGTCTGGCGGTCAATGATTTCTTGGCACGAACATCATAG
AA sequence Show only first row Show all	>Lus10030305 pacid=23153049 polypeptide=Lus10030305 locus=Lus10030305.g ID=Lus10030305.BGIv1.0 annot-version=v1.0 MEIDPIPNGNSSVNSVSTTASPMVTAPSSNLTRLTESLKLEHQFVRVPFEHYKKTIRVNHRAVEKEISSVVSGVNEAADSDLSKDDAVEHLTSLVSRLQG LKRKLEEGSRTENLQAQRCRSRLNHLESADADNLTEWSNTRLKRILVDYMLRMSYYDTAMKLAESSNIQDLVDIDVFQEARRVIDALQNKEVAPALAWCA DNRSRLKKSKSKFEFQLRLQEFIELVRADNHMRAIAYARKYLSPWGATHMKELQRVMATLAFKSATECATYKVLFEPKQWDYLVGQFKQEFFKLYGMTLE PLLNIYLQAGLSALKTPYCYEEDCPKEDPLSQESFRKLALPLPYSKQHHSKLVCYITKELMDTENPPQVLPNGYVYSTKALEEMAKKNNGKITCPRTGLV CNYSELWRSEMMMNQGVNTQTVDPADPNLFESQYVHDASQGQASSYLPSSTGPEAASWTVHKVEGHPSQDRVLASGGYQHGQQSEPVVRNVQDGSNATPL TSSSTIGAANAVQDYNSYASYSNTTEPYNYGSSAYPGYYSGYQQQTNSTYSQQQPNNAYSQQQPNNAYPQQQPNNAYPQPQQNNAYSVQQPNDSYSQTFG AYQNTGAAYQPNSSFQNTGSYAGTASYSTTHYNPGNYQTTGGYSSSGHNNQVSVWNNGNYANYTSYQYPNYNSDTASAYGSGTADTTYQQPYKQWPDYYS QTEVTCAPGTEHLPVASNSNPGSAVPSTCITSGYSTPTNQPQPPLQHQPQFPPPTSFTPTWRPETKSSELPSVQPEGAASGAHDNYWNQPAPTFQTHLAT PVQPQYQNSIDSKTIYENFQEQMTAPQGSNSQYPVAHQVSKSYPSTLQNVSSFDTQRVNNLQIPTNPRIASNAAIGFAKTDKSRFATNSAPRPAYVSVPL PKTHDKVSSNSAADPMLKPTMFPKSLCGYVERALGRHKDDDVRRAACEAVMKEIITKATADGTLYTKDWDSEPLFTVPDPHFMNKENLHYSTPVTTPNYR KSPNRRSKSRWEPLPEEKMPEVPVSSSNDTIKYDNWDRKAFSGYSAAKGNTAFNNFKYSASQQKTPGKSAQRPTKRQRVNDTVFTNNEDGSSGSDKEQSL TAYYSGAMALANNPDEKKKRESRCKRFEKGQGHRPDINYFRPKNAGPANVLYSRRASAMVLSKSFDDSVNQAVEDIDWDALTVKGTCQQIEKRFLRLTSA PDPSTVRPEDVLEKALLMVQNSEKNYLFKCDQLKSIRQDLTVQRIRNHLTVKVYETHARLAVEVGDLAEYNQCQSQLQILYCEGIEGCIMEFAAYNLLCV ILHSNNKRDLLSSMSRLTQEAKEDEAVKHALAVIAAVTSGNYVTFFKLYKTAPNLNTCLMDLYVEKMRYKAVVCMSRSYRPTIPILYIAQMLGFSGAAEG NGETDSSGFEECLEWLKAHGASLTADNNEVDAKASSSTLFMPEPEDAVAHGDSSLAVNDFLARTS

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G39340		AtSAC3A	yeast Sac3 homolog A, SAC3/GAN...		Lus10030305 [exp]	0	1
AT1G23230			unknown protein		Lus10016701 [exp]	1.4	0.9133
AT5G22450			unknown protein		Lus10020607 [exp]	2.0	0.8898
AT4G15475			F-box/RNI-like superfamily pro...		Lus10012764 [exp]	2.4	0.8890
AT5G41370		XPB1, ATXPB1	ARABIDOPSIS HOMOLOG OF XERODER...		Lus10032287 [exp]	3.0	0.8571
AT1G17760		CSTF77, ATCSTF7...	ARABIDOPSIS THALIANA CLEAVAGE ...		Lus10028994 [exp]	3.9	0.8324
AT1G03370			C2 calcium/lipid-binding and G...		Lus10001915 [exp]	5.0	0.8713
AT5G26240		ATCLC-D, CLC-D	chloride channel D (.1)		Lus10010531 [exp]	6.0	0.8795
AT5G24360		AtIRE1b, ATIRE1...	ARABIDOPSIS THALIANA INOSITOL ...		Lus10013212 [exp]	6.3	0.8466
AT4G00060		MEE44	maternal effect embryo arrest ...		Lus10009279 [exp]	7.5	0.8269
AT4G24620		PGI1	phosphoglucose isomerase 1 (.1...		Lus10015959 [exp]	8.1	0.8069

Compare expression of checked genes

Lus10030305 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.