Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G55090 321 / 4e-104 ABCG16 ATP-binding cassette G16, ABC-2 type transporter family protein (.1) AT2G39350 314 / 2e-101 ABCG1 ATP-binding cassette G1, ABC-2 type transporter family protein (.1) AT3G53510 264 / 2e-82 ABCG20 ATP-binding cassette G20, ABC-2 type transporter family protein (.1) AT3G55110 258 / 2e-80 ABCG18 ATP-binding cassette G18, ABC-2 type transporter family protein (.1) AT3G55130 258 / 2e-80 ABCG19, ATWBC19 ATP-binding cassette G19, white-brown complex homolog 19 (.1) AT5G13580 254 / 1e-78 ABCG6 ATP-binding cassette G6, ABC-2 type transporter family protein (.1) AT2G37360 227 / 2e-68 ABCG2 ATP-binding cassette G2, ABC-2 type transporter family protein (.1) AT3G55100 219 / 3e-66 ABCG17 ATP-binding cassette G17, ABC-2 type transporter family protein (.1) AT1G17840 122 / 1e-30 AtABCG11, WBC11, DSO, ABCG11 ,COF1, ATWBC11 DESPERADO, CUTICULAR DEFECT AND ORGAN FUSION 1, ARABIDOPSIS THALIANA WHITE-BROWN COMPLEX HOMOLOG PROTEIN 11, ATP-binding cassette G11, white-brown complex homolog protein 11 (.1) AT3G21090 119 / 1e-29 ABCG15 ATP-binding cassette G15, ABC-2 type transporter family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10023465 [exp] 493 / 1e-170 AT2G39350 1064 / 0.0 ATP-binding cassette G1, ABC-2 type transporter family protein (.1) Lus10025281 [exp] 289 / 7e-92 AT2G37360 1035 / 0.0 ATP-binding cassette G2, ABC-2 type transporter family protein (.1) Lus10001971 [exp] 180 / 7e-57 AT3G55090 79 / 3e-18 ATP-binding cassette G16, ABC-2 type transporter family protein (.1) Lus10033663 [exp] 171 / 7e-48 AT2G39350 454 / 6e-151 ATP-binding cassette G1, ABC-2 type transporter family protein (.1) Lus10039859 [exp] 172 / 9e-48 AT2G37360 319 / 5e-97 ATP-binding cassette G2, ABC-2 type transporter family protein (.1) Lus10018624 [exp] 169 / 6e-47 AT2G37360 316 / 7e-96 ATP-binding cassette G2, ABC-2 type transporter family protein (.1) Lus10017707 [exp] 159 / 7e-44 AT2G37360 456 / 6e-151 ATP-binding cassette G2, ABC-2 type transporter family protein (.1) Lus10019238 [exp] 137 / 1e-35 AT2G37360 296 / 1e-90 ATP-binding cassette G2, ABC-2 type transporter family protein (.1) Lus10004274 [exp] 137 / 1e-35 AT2G37360 296 / 2e-90 ATP-binding cassette G2, ABC-2 type transporter family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G213400 [exp] 417 / 5e-141 AT3G55090 1014 / 0.0 ATP-binding cassette G16, ABC-2 type transporter family protein (.1) Potri.008G047900 [exp] 405 / 9e-137 AT3G55090 1008 / 0.0 ATP-binding cassette G16, ABC-2 type transporter family protein (.1) Potri.002G156900 [exp] 311 / 2e-100 AT3G53510 950 / 0.0 ATP-binding cassette G20, ABC-2 type transporter family protein (.1) Potri.014G080200 [exp] 307 / 8e-99 AT2G37360 955 / 0.0 ATP-binding cassette G2, ABC-2 type transporter family protein (.1) Potri.006G215100 [exp] 296 / 1e-94 AT3G53510 860 / 0.0 ATP-binding cassette G20, ABC-2 type transporter family protein (.1) Potri.012G045100 [exp] 169 / 4e-47 AT3G55130 270 / 3e-79 ATP-binding cassette G19, white-brown complex homolog 19 (.1) Potri.007G004800 [exp] 149 / 7e-40 AT3G55100 266 / 5e-79 ATP-binding cassette G17, ABC-2 type transporter family protein (.1) Potri.015G036100 [exp] 137 / 9e-36 AT2G37360 276 / 2e-81 ATP-binding cassette G2, ABC-2 type transporter family protein (.1) Potri.018G152600 [exp] 120 / 6e-30 AT1G17840 1152 / 0.0 DESPERADO, CUTICULAR DEFECT AND ORGAN FUSION 1, ARABIDOPSIS THALIANA WHITE-BROWN COMPLEX HOMOLOG PROTEIN 11, ATP-binding cassette G11, white-brown complex homolog protein 11 (.1) Potri.017G155300 [exp] 118 / 3e-29 AT1G17840 1174 / 0.0 DESPERADO, CUTICULAR DEFECT AND ORGAN FUSION 1, ARABIDOPSIS THALIANA WHITE-BROWN COMPLEX HOMOLOG PROTEIN 11, ATP-binding cassette G11, white-brown complex homolog protein 11 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [flax] [poplar] P-loop_NTPase PF00005 [flax] [poplar] ABC_tran ABC transporter
Representative CDS sequence Show only first row Show all	>Lus10030307 pacid=23153009 polypeptide=Lus10030307 locus=Lus10030307.g ID=Lus10030307.BGIv1.0 annot-version=v1.0 ATGGAGCTCACTCGCGATCATCAACCGTCTCCGGTACCACGCGCCTTCTTCGGCCTGTCCCCTACTCTGGGACAGCTTCTCAAGCGCGTCGGAGACGTTC GCAAGGAAGCTACCGGCGACGGAAGTGAAACTCCCGAACACCAAGTGCTCGAGCTCGGAGATTCCCGCCCGGAGGTTCCCCGGGCGATCCCCTTCGTCCT CTCCTTCAACAACCTGACTTACAGCGTCCGAGTCCGCCGCAAGCTGAGGCTTCCGGACTTGCTCCCCGTGCGCCGGATCAATCGCCTCGGACCGGCTGCT ACGGACACGGAACCCGTAGCCGGAGAGAGCCTGAGCCTGTTCACCAGGACGAAGACGCTGCTCAATGGCATTTCCGGTGAGGCGCGCGACGGCGAGATTA TGGCGGTGCTCGGAGCCAGTGGGTCCGGGAAATCGACTCTGATTGACGCGCTGGCGAACCGAATCGCAAAAGATTCTCTGAAAGGGACGGTTTATTTGAA CGGAATCGCCCTGCCCGGCCGCCGAAACGCCGCCAAGACGATAATCGGCGACGAGGGACACCGCGGAGTCTCCGGCGGGGAGCGCCGCCGCGTCTCAATC GGAATCGACATAATCCACGACCCAATCGTGCTCTTCCTCGACGAGCCGACTTCTGGACTCGACTCCACCAGCGCTTTCATGGTGGTCAAAGTCCTCCAGC GAATCGCCCGCAGCGGCAGCATTGTTATAATGTCCGTTCATCAGCCTAGCTACCGGATCCTTGGGTTACTCGACCGGTTAATCTTCCTCTCCCGCGGTCA AACCGTTTATAGCGGGTCGCCCGTGAACCTGCCGGTTTTTTTCTCGGACTTCGGGCACCCGATTCCCGAGACAGAGAACCGAACAGAGTTCGCGCTAGAT CTTATCCGCGAGCTTGAAGGCTCCCCTGGTGGAACCAAATCCCTAGTCGAATTCAACAAGCAGTGGCAAACCATGCGTTAG
AA sequence Show only first row Show all	>Lus10030307 pacid=23153009 polypeptide=Lus10030307 locus=Lus10030307.g ID=Lus10030307.BGIv1.0 annot-version=v1.0 MELTRDHQPSPVPRAFFGLSPTLGQLLKRVGDVRKEATGDGSETPEHQVLELGDSRPEVPRAIPFVLSFNNLTYSVRVRRKLRLPDLLPVRRINRLGPAA TDTEPVAGESLSLFTRTKTLLNGISGEARDGEIMAVLGASGSGKSTLIDALANRIAKDSLKGTVYLNGIALPGRRNAAKTIIGDEGHRGVSGGERRRVSI GIDIIHDPIVLFLDEPTSGLDSTSAFMVVKVLQRIARSGSIVIMSVHQPSYRILGLLDRLIFLSRGQTVYSGSPVNLPVFFSDFGHPIPETENRTEFALD LIRELEGSPGGTKSLVEFNKQWQTMR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G37360		ABCG2	ATP-binding cassette G2, ABC-2...		Lus10030307 [exp]	0	1
AT5G13580		ABCG6	ATP-binding cassette G6, ABC-2...		Lus10030306 [exp]	1.7	0.9706
AT5G41040			HXXXD-type acyl-transferase fa...		Lus10032554 [exp]	6.2	0.9478
AT2G39350		ABCG1	ATP-binding cassette G1, ABC-2...		Lus10023465 [exp]	6.3	0.9429
AT2G39350		ABCG1	ATP-binding cassette G1, ABC-2...		Lus10040342 [exp]	6.5	0.9346
AT5G13580		ABCG6	ATP-binding cassette G6, ABC-2...		Lus10001972 [exp]	6.9	0.9441
AT1G54540			Late embryogenesis abundant (L...		Lus10031888 [exp]	8.7	0.9418
AT2G39350		ABCG1	ATP-binding cassette G1, ABC-2...		Lus10040341 [exp]	10.1	0.9142
AT3G11430		ATGPAT5, GPAT5	glycerol-3-phosphate acyltrans...		Lus10040277 [exp]	10.4	0.9362
AT5G09520		PELPK2	Pro-Glu-Leu|Ile|Val-Pro-Lys 2,...		Lus10034813 [exp]	13.0	0.9344
AT1G05450			Bifunctional inhibitor/lipid-t...		Lus10021911 [exp]	13.8	0.9248

Compare expression of checked genes

Lus10030307 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.