Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G46290 709 / 0 HERK1 hercules receptor kinase 1 (.1) AT5G24010 569 / 0 Protein kinase superfamily protein (.1) AT2G21480 568 / 0 Malectin/receptor-like protein kinase family protein (.1) AT3G51550 509 / 4e-168 FER FERONIA, Malectin/receptor-like protein kinase family protein (.1) AT3G04690 498 / 3e-164 ANX1 ANXUR1, Malectin/receptor-like protein kinase family protein (.1) AT2G39360 472 / 2e-154 Protein kinase superfamily protein (.1) AT5G59700 456 / 2e-148 Protein kinase superfamily protein (.1) AT5G54380 429 / 1e-137 THE1 THESEUS1, protein kinase family protein (.1) AT5G61350 414 / 8e-132 Protein kinase superfamily protein (.1) AT4G39110 401 / 8e-127 Malectin/receptor-like protein kinase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10003312 [exp] 1511 / 0 AT3G46290 741 / 0.0 hercules receptor kinase 1 (.1) Lus10028140 [exp] 724 / 0 AT3G46290 1024 / 0.0 hercules receptor kinase 1 (.1) Lus10042844 [exp] 717 / 0 AT3G46290 1025 / 0.0 hercules receptor kinase 1 (.1) Lus10037887 [exp] 604 / 0 AT5G54380 1279 / 0.0 THESEUS1, protein kinase family protein (.1) Lus10028805 [exp] 563 / 0 AT4G39110 1139 / 0.0 Malectin/receptor-like protein kinase family protein (.1) Lus10017478 [exp] 561 / 0 AT4G39110 1149 / 0.0 Malectin/receptor-like protein kinase family protein (.1) Lus10038595 [exp] 426 / 2e-142 AT5G54380 718 / 0.0 THESEUS1, protein kinase family protein (.1) Lus10010443 [exp] 421 / 3e-134 AT2G23200 498 / 6e-164 Protein kinase superfamily protein (.1) Lus10016907 [exp] 404 / 5e-128 AT3G04690 967 / 0.0 ANXUR1, Malectin/receptor-like protein kinase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G213200 [exp] 902 / 0 AT3G46290 808 / 0.0 hercules receptor kinase 1 (.1) Potri.001G234200 [exp] 766 / 0 AT3G46290 1106 / 0.0 hercules receptor kinase 1 (.1) Potri.009G026600 [exp] 747 / 0 AT3G46290 1093 / 0.0 hercules receptor kinase 1 (.1) Potri.011G128000 [exp] 614 / 0 AT5G54380 1231 / 0.0 THESEUS1, protein kinase family protein (.1) Potri.010G145600 [exp] 538 / 1e-179 AT3G04690 1027 / 0.0 ANXUR1, Malectin/receptor-like protein kinase family protein (.1) Potri.008G105500 [exp] 535 / 2e-178 AT3G04690 999 / 0.0 ANXUR1, Malectin/receptor-like protein kinase family protein (.1) Potri.016G138700 [exp] 518 / 2e-171 AT3G51550 1252 / 0.0 FERONIA, Malectin/receptor-like protein kinase family protein (.1) Potri.005G143700 [exp] 465 / 8e-152 AT5G24010 566 / 0.0 Protein kinase superfamily protein (.1) Potri.005G144100 [exp] 457 / 9e-149 AT5G24010 550 / 0.0 Protein kinase superfamily protein (.1) Potri.005G144200 [exp] 455 / 6e-148 AT5G24010 558 / 0.0 Protein kinase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0202 [flax] [poplar] GBD PF11721 [flax] [poplar] Malectin Malectin domain CL0016 [flax] [poplar] PKinase PF07714 [flax] [poplar] PK_Tyr_Ser-Thr Protein tyrosine and serine/threonine kinase
Representative CDS sequence Show only first row Show all	>Lus10030308 pacid=23153174 polypeptide=Lus10030308 locus=Lus10030308.g ID=Lus10030308.BGIv1.0 annot-version=v1.0 ATGGTGGTGGTTCATAGCTTCAAGCTGCTCATCTGGGCTCTTCCATTTTATTGCTTGGCTTCAGTTTCACTAATAAGTGGGTATGTTCCACCCACCAACT ATTTGATCAATTGCGGATCCACCAGCAACACCTCGATCGACGGGGGACGAACTTTTGCAGCTGATAACGATGATTTCTTCTCCAGGATGCTATCCCCGCA ACAGAATGTTTCAATTACTGCTCCTAATTCCATCTCCTCCGCCCTCTATCGAACTGCCAGAGTTTTCACTGCACCATCTCGTTACACATTCCCAATCCGG CAGTCCGGCCGCCTGTGGATTCGCCTCCATTTCTACCCTTTCCTTTCGGGGAGTTACAATCTCAGCACCGCTCATTTCTCCGTCTCTGCTCAGAATTTCA CCCTCTTCAAGGAGTACAGAGCCAAGCCTGATGAAGATCAGCCTGAGGTGAGGGAGTTCTCTCTCAATCTCAACTCCGGTACTAATCTGGTTCTCGATTT CACTCCTTCCCACAATTCGTTCGCTTTTTTGAACGCATTGGAAGTGTTGTCAATACCAGAAGGGGTGATCCCTCAGACTTCCCAGAATAAGGCATTGGAG ACTGTTCATAGGGTGAACATGGGGAAAACGAATGTGTTTCCTGCAAATGATACCTTATGGAGGCTTTGGGTTTCTGATGAAAAGTTTCTGAGGCATGATT TTCTTGCAGTCAACGTGACGAATCTCTCTGCTGTAAGTTTCAAAGATAGAGGCCCAACCAACTTCTCTGCTCCTCTTGGTGTCTACGGCACAGCTACTAG GTTGAATTCTGATGGTAATCCGGGTACATTGGCAAATGTTACGTGGCATTTTGGTGTTGACCCTGGGTTTGATTACCTTGTGAGGTTCCATTTCTGTGAT ATATTGGCTCTTGACCCTCACCCAAACTTCTATTTCAATGTCTATGTTGAGTCTGAGCTGGTCTACAAGTATCTTGATCTCAGGAATCTCACGGGATACT CCTCTGGTGCTCCTTACTCTATGGATTACATTGCAGGCTCAGTTGCTGGTGACACTGTTACCATAAGTATAGGCCCTCCTCCTAATAACGACAACAATCC AATCGCCATACTCAACGGCTTGGAGCTAGTCAAGATCAGCAACTCCAAGAACAGTCTTGATGTGTTGGATATTTCTTCTCCCAAGAATTCCAAGCCCAAT GTTGTTCTCATACTTGTCTTGGTTGTTGGACTAGTGGCTGTTCTTCTTTCTGGGTTGGTTGTGTGGGTCGTTTGCTGTAGGAGGAGGAGGAGGCAATTTG GGAAAGGTAATCATTTGAAGGGGGATCAGTTTGCTGCGTACGGAGGGGGTACGATTTACTCGACGGATTACTGCAATGGTACAGCATTTTCCATGTCGAA ATTCAACTACCGGTTCCCGTTTTACGCTATCCAAGAAGCTACTGATAACTTCAGTGAGAATTTGGTACTGGGTGCTGGAGGTTTTGGTAAGGTTTACAAG GGAGTTTTAAGAGATGAGATGGTGGTGGCAGTGAAAAGAGCAAGCTCCCAATCACAAGGGATTTCGGAATTTAGGACTGAGATTGAACTGCTGTCCCAGT TTCGCCACAAGCATTTGGTGTCTTTAATTGGATACTGTGATGAAAGGAATGAGATGATTATATTGTACGAGTATATGCAGAATGGCAACTTGAAAGACCA TCTCTACGGTTCAGAACATCCCAGCTTGAGTTGGAGGCAACGACTTGAGATATGCATCGGAGCAGCTAAAGGGCTTCACTATCTTCACACTGGAACAGCA AAGTCTATCATCCACCGGGATGTCAAGTCTGCAAACATCCTGCTAGACGAGGATTTCATGGCTAAAGTTGCAGACTTTGGTCTTTCAAAGACTGTCCCGG AGATCGACCATACACATGTAAGCACGGCAGTGAAAGGAAGCTTTGGTTATCTAGATCCAGAATACTTTCTGAGGCAACAACTGACAGAGAAATCAGATGT CTACTCGTTTGGAGTAGTGTTGTTTGAGGTACTTTGCGGCAGACCAGTGATCGACCCGTCACTGCCTAGGGAAAATGTGAACTTGGTGGATTATGCACTG AAGAACATGAGGAAAGGCAAGTTGGAGGAAGTTGTCGATTCTAGAGTTAAGGAGGAAATAAAGCCAGATTCACTGAAAAAGTTTGCGTACATAGCAGAGA AATGCTTGGCTCATAACGGAATGGATAGACCTTCGATGGGAGATGTGTTGTGGAACTTGGAATGCACACTTCAGCTACAGGTGAATGAAGAATTTGCTCT TCAGTGGAAGGAGGAAATGTCCAGCAGCAATAATGGTGATAACAATGGAGCCGGAAATCCACAGATCAACCATGTCAAGAGCATTTCGGGGAGTGCAGAA CTTGGTGACCTTGGTGATGTTTCCATGAGCCAGGTGTTTGCTAAGTTGGTGAGCGACAACAGTGAGGAGGAAACGAGGTAG
AA sequence Show only first row Show all	>Lus10030308 pacid=23153174 polypeptide=Lus10030308 locus=Lus10030308.g ID=Lus10030308.BGIv1.0 annot-version=v1.0 MVVVHSFKLLIWALPFYCLASVSLISGYVPPTNYLINCGSTSNTSIDGGRTFAADNDDFFSRMLSPQQNVSITAPNSISSALYRTARVFTAPSRYTFPIR QSGRLWIRLHFYPFLSGSYNLSTAHFSVSAQNFTLFKEYRAKPDEDQPEVREFSLNLNSGTNLVLDFTPSHNSFAFLNALEVLSIPEGVIPQTSQNKALE TVHRVNMGKTNVFPANDTLWRLWVSDEKFLRHDFLAVNVTNLSAVSFKDRGPTNFSAPLGVYGTATRLNSDGNPGTLANVTWHFGVDPGFDYLVRFHFCD ILALDPHPNFYFNVYVESELVYKYLDLRNLTGYSSGAPYSMDYIAGSVAGDTVTISIGPPPNNDNNPIAILNGLELVKISNSKNSLDVLDISSPKNSKPN VVLILVLVVGLVAVLLSGLVVWVVCCRRRRRQFGKGNHLKGDQFAAYGGGTIYSTDYCNGTAFSMSKFNYRFPFYAIQEATDNFSENLVLGAGGFGKVYK GVLRDEMVVAVKRASSQSQGISEFRTEIELLSQFRHKHLVSLIGYCDERNEMIILYEYMQNGNLKDHLYGSEHPSLSWRQRLEICIGAAKGLHYLHTGTA KSIIHRDVKSANILLDEDFMAKVADFGLSKTVPEIDHTHVSTAVKGSFGYLDPEYFLRQQLTEKSDVYSFGVVLFEVLCGRPVIDPSLPRENVNLVDYAL KNMRKGKLEEVVDSRVKEEIKPDSLKKFAYIAEKCLAHNGMDRPSMGDVLWNLECTLQLQVNEEFALQWKEEMSSSNNGDNNGAGNPQINHVKSISGSAE LGDLGDVSMSQVFAKLVSDNSEEETR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G46290		HERK1	hercules receptor kinase 1 (.1...		Lus10030308 [exp]	0	1
AT3G03980			NAD(P)-binding Rossmann-fold s...		Lus10002628 [exp]	2.0	0.8543
AT1G01540			Protein kinase superfamily pro...		Lus10036386 [exp]	2.0	0.8366
AT5G51980	C3HZnF		Transducin/WD40 repeat-like su...		Lus10034716 [exp]	4.2	0.8500
AT1G80600		WIN1	HOPW1-1-interacting 1 (.1)		Lus10031775 [exp]	4.6	0.8262
AT5G55500		ATXYLT	"beta-1,2-xylosyltransferase",...		Lus10014902 [exp]	5.5	0.8482
					Lus10039878 [exp]	8.5	0.8334
AT5G15650		REVERSIBLYGLYCO...	reversibly glycosylated polype...		Lus10034664 [exp]	8.8	0.8158
AT1G80760		NLM7, NIP6;1	NOD26-like intrinsic protein 6...		Lus10024066 [exp]	9.3	0.7884
AT5G62810		ATPEX14, PED2, ...	PEROXISOME DEFECTIVE 2, peroxi...		Lus10039935 [exp]	11.0	0.8259
AT3G53180		NodGS	nodulin/glutamine synthase-lik...		Lus10024005 [exp]	12.6	0.8179

Compare expression of checked genes

Lus10030308 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.