Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G55120 162 / 2e-51 A11, CFI, TT5 TRANSPARENT TESTA 5, CHALCONE FLAVANONE ISOMERASE, Chalcone-flavanone isomerase family protein (.1) AT5G66220 142 / 4e-44 Chalcone-flavanone isomerase family protein (.1) AT5G66230 140 / 2e-40 Chalcone-flavanone isomerase family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10030310 [exp] 243 / 2e-83 AT3G55120 270 / 5e-92 TRANSPARENT TESTA 5, CHALCONE FLAVANONE ISOMERASE, Chalcone-flavanone isomerase family protein (.1) Lus10003311 [exp] 241 / 8e-83 AT3G55120 274 / 8e-94 TRANSPARENT TESTA 5, CHALCONE FLAVANONE ISOMERASE, Chalcone-flavanone isomerase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G213000 [exp] 182 / 3e-59 AT3G55120 300 / 1e-103 TRANSPARENT TESTA 5, CHALCONE FLAVANONE ISOMERASE, Chalcone-flavanone isomerase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0560 [flax] [poplar] Chalcone-like PF02431 [flax] [poplar] Chalcone Chalcone-flavanone isomerase
Representative CDS sequence Show only first row Show all	>Lus10030309 pacid=23152963 polypeptide=Lus10030309 locus=Lus10030309.g ID=Lus10030309.BGIv1.0 annot-version=v1.0 ATGATATTGCCGTTATCTGGGGCACAGTACTCGGAGAAAGTGGTGGAGAATTGTGTGGCAGCGTGGAAATCCAGGGGAGTTTACACTGATGCAGAGGCTA AAGCCACAGACAAGTTCCTTGAAATCTTCAAGGACCAAACCTTCCCTCCTGGAGCTTCTATTCTCTTCACCCAGTTCCCACATGGATCATTAGCCATAAG TTTCTCCAAGGATGGGTCGGTGCCGGAAACTGCTGCGGCGGTGATAGATAACAAGCCGCTGTCGGAAGCAGTGCTATGGTCCATCATCGGGGAGCACGGC GTGTCCCCTGCTGCTAAACAGAGCCTGGCTGAGAGATTTTCGCTGTTGCTTAAGGCTTAA
AA sequence Show only first row Show all	>Lus10030309 pacid=23152963 polypeptide=Lus10030309 locus=Lus10030309.g ID=Lus10030309.BGIv1.0 annot-version=v1.0 MILPLSGAQYSEKVVENCVAAWKSRGVYTDAEAKATDKFLEIFKDQTFPPGASILFTQFPHGSLAISFSKDGSVPETAAAVIDNKPLSEAVLWSIIGEHG VSPAAKQSLAERFSLLLKA

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G55120		A11, CFI, TT5	TRANSPARENT TESTA 5, CHALCONE ...		Lus10030309 [exp]	0	1
AT3G56550			Pentatricopeptide repeat (PPR)...		Lus10000020 [exp]	2.4	0.8192
AT4G31500		SUR2, RNT1, RED...	SUPERROOT 2, RUNT 1, RED ELONG...		Lus10012395 [exp]	3.0	0.8512
AT5G04970			Plant invertase/pectin methyle...		Lus10028882 [exp]	6.3	0.8203
AT4G02750			Tetratricopeptide repeat (TPR)...		Lus10027365 [exp]	6.3	0.8090
AT4G02870			unknown protein		Lus10027591 [exp]	6.6	0.7925
AT3G55610		P5CS2	delta 1-pyrroline-5-carboxylat...		Lus10004697 [exp]	7.2	0.7856
AT5G25840			Protein of unknown function (D...		Lus10000571 [exp]	13.4	0.8066
AT3G10720			Plant invertase/pectin methyle...		Lus10008937 [exp]	14.7	0.8006
AT5G40780		LHT1, LTH1	lysine histidine transporter 1...		Lus10032074 [exp]	15.5	0.8054
AT2G26650		AKT1, ATAKT1	K+ transporter 1, K+ transport...		Lus10017765 [exp]	15.5	0.8003

Compare expression of checked genes

Lus10030309 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.