Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G55120 258 / 2e-87 A11, CFI, TT5 TRANSPARENT TESTA 5, CHALCONE FLAVANONE ISOMERASE, Chalcone-flavanone isomerase family protein (.1) AT5G66230 207 / 4e-64 Chalcone-flavanone isomerase family protein (.1.2) AT5G66220 187 / 1e-60 Chalcone-flavanone isomerase family protein (.1) AT5G05270 74 / 5e-16 Chalcone-flavanone isomerase family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10003311 [exp] 400 / 4e-144 AT3G55120 274 / 8e-94 TRANSPARENT TESTA 5, CHALCONE FLAVANONE ISOMERASE, Chalcone-flavanone isomerase family protein (.1) Lus10030309 [exp] 243 / 3e-83 AT3G55120 162 / 2e-51 TRANSPARENT TESTA 5, CHALCONE FLAVANONE ISOMERASE, Chalcone-flavanone isomerase family protein (.1) Lus10012878 [exp] 70 / 2e-14 AT5G05270 230 / 1e-76 Chalcone-flavanone isomerase family protein (.1.2) Lus10030529 [exp] 68 / 5e-14 AT5G05270 222 / 2e-74 Chalcone-flavanone isomerase family protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G213000 [exp] 291 / 1e-100 AT3G55120 300 / 1e-103 TRANSPARENT TESTA 5, CHALCONE FLAVANONE ISOMERASE, Chalcone-flavanone isomerase family protein (.1) Potri.019G057800 [exp] 77 / 3e-17 AT5G05270 270 / 6e-93 Chalcone-flavanone isomerase family protein (.1.2) Potri.001G380700 [exp] 46 / 6e-06 AT1G53520 246 / 2e-81 Chalcone-flavanone isomerase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0560 [flax] [poplar] Chalcone-like PF02431 [flax] [poplar] Chalcone Chalcone-flavanone isomerase
Representative CDS sequence Show only first row Show all	>Lus10030310 pacid=23153091 polypeptide=Lus10030310 locus=Lus10030310.g ID=Lus10030310.BGIv1.0 annot-version=v1.0 ATGGATCCAGTATCAGTTGCAGAAATCCAAGTCGACGGCGTCGCATTTCCGGCCTCCATCAAACCTCCGGCGTCCAAGTCCAGTCACTTCCTCGCCGGCG CAGGCGTAAGGGGACTGGAGATACAAGGGAATTTCGTGAAGTTCACGGCGATCGGAGTGTACGTGGAGGACAAATCGGTGGCGACGGTTTCTGACAAATG GAAAGGGAAGACCGCTGAGGAGTTGAAGCAGTCCGTCGGATTCTACCGAGATATCGTTTCAGGACCATTCGAGAAGTTGACAAGAGTGACGATGATATTG CCGTTATCTGGGGCACAGTACTCGGAGAAAGTGGTGGAGAATTGTGTGGCAGCGTGGAAATCCAGGGGAGTTTACACTGATGCAGAGGCTAAAGCCACAG ACAAGTTCCTTGAAATCTTCAAGGACCAAACCTTCCCTCCTGGAGCTTCTATTCTCTTCACCCAGTTCCCACATGGATCATTAGCCATAAGTTTCTCCAA GGATGGGTCGGTGCCGGAAACTGCTGCGGCGGTGATAGATAACAAGCCGCTGTCGGAGGCAGTGCTATGGTCGATCATCGGGGAGCACGGCGTGTCCCCT GCTGCTAAGCAGAGCTTGGCTGAGAGATTTTCGCTGTTGCTTAAGGCTTAA
AA sequence Show only first row Show all	>Lus10030310 pacid=23153091 polypeptide=Lus10030310 locus=Lus10030310.g ID=Lus10030310.BGIv1.0 annot-version=v1.0 MDPVSVAEIQVDGVAFPASIKPPASKSSHFLAGAGVRGLEIQGNFVKFTAIGVYVEDKSVATVSDKWKGKTAEELKQSVGFYRDIVSGPFEKLTRVTMIL PLSGAQYSEKVVENCVAAWKSRGVYTDAEAKATDKFLEIFKDQTFPPGASILFTQFPHGSLAISFSKDGSVPETAAAVIDNKPLSEAVLWSIIGEHGVSP AAKQSLAERFSLLLKA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G55120		A11, CFI, TT5	TRANSPARENT TESTA 5, CHALCONE ...		Lus10030310 [exp]	0	1
AT4G31950		CYP82C3	"cytochrome P450, family 82, s...		Lus10042921 [exp]	1.0	0.8395
AT1G78230			Outer arm dynein light chain 1...		Lus10033444 [exp]	3.5	0.7983
AT3G43270			Plant invertase/pectin methyle...		Lus10017375 [exp]	4.5	0.8226
AT5G65470			O-fucosyltransferase family pr...		Lus10002653 [exp]	4.9	0.7734
AT1G05870			Protein of unknown function (D...		Lus10025562 [exp]	6.0	0.8008
AT4G31940		CYP82C4	"cytochrome P450, family 82, s...		Lus10042922 [exp]	8.4	0.7670
AT4G10310		ATHKT1, HKT1	high-affinity K+ transporter 1...		Lus10026948 [exp]	9.2	0.7823
AT4G20960			Cytidine/deoxycytidylate deami...		Lus10037850 [exp]	12.0	0.7344
AT3G10720			Plant invertase/pectin methyle...		Lus10008937 [exp]	13.0	0.7844
					Lus10016618 [exp]	15.1	0.7647

Compare expression of checked genes

Lus10030310 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.