Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G12360 270 / 3e-86 ITN1 INCREASED TOLERANCE TO NACL, Ankyrin repeat family protein (.1) AT3G09550 219 / 1e-66 Ankyrin repeat family protein (.1) AT2G01680 113 / 5e-28 Ankyrin repeat family protein (.1) AT5G60070 103 / 2e-24 ankyrin repeat family protein (.1) AT2G31820 103 / 2e-24 Ankyrin repeat family protein (.1) AT1G05640 100 / 3e-23 Ankyrin repeat family protein (.1) AT1G07710 98 / 1e-22 Ankyrin repeat family protein (.1) AT5G02620 88 / 4e-19 ATANK1, ANK1 ankyrin-like1 (.1) AT5G54710 61 / 5e-10 Ankyrin repeat family protein (.1) AT5G50140 57 / 9e-09 Ankyrin repeat family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10003308 [exp] 344 / 4e-115 AT3G12360 981 / 0.0 INCREASED TOLERANCE TO NACL, Ankyrin repeat family protein (.1) Lus10023460 [exp] 257 / 2e-81 AT3G12360 929 / 0.0 INCREASED TOLERANCE TO NACL, Ankyrin repeat family protein (.1) Lus10040335 [exp] 249 / 1e-78 AT3G12360 868 / 0.0 INCREASED TOLERANCE TO NACL, Ankyrin repeat family protein (.1) Lus10015037 [exp] 209 / 1e-62 AT3G09550 849 / 0.0 Ankyrin repeat family protein (.1) Lus10003986 [exp] 208 / 2e-62 AT3G09550 831 / 0.0 Ankyrin repeat family protein (.1) Lus10021814 [exp] 119 / 5e-30 AT2G01680 771 / 0.0 Ankyrin repeat family protein (.1) Lus10034579 [exp] 117 / 3e-29 AT2G01680 768 / 0.0 Ankyrin repeat family protein (.1) Lus10015224 [exp] 109 / 2e-26 AT1G07710 727 / 0.0 Ankyrin repeat family protein (.1) Lus10005432 [exp] 108 / 2e-26 AT1G07710 720 / 0.0 Ankyrin repeat family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G048400 [exp] 291 / 2e-94 AT3G12360 862 / 0.0 INCREASED TOLERANCE TO NACL, Ankyrin repeat family protein (.1) Potri.010G212700 [exp] 265 / 2e-84 AT3G12360 858 / 0.0 INCREASED TOLERANCE TO NACL, Ankyrin repeat family protein (.1) Potri.006G214500 [exp] 221 / 2e-67 AT3G12360 742 / 0.0 INCREASED TOLERANCE TO NACL, Ankyrin repeat family protein (.1) Potri.010G106800 [exp] 123 / 2e-31 AT2G01680 778 / 0.0 Ankyrin repeat family protein (.1) Potri.008G134500 [exp] 121 / 1e-30 AT2G01680 750 / 0.0 Ankyrin repeat family protein (.1) Potri.017G006800 [exp] 107 / 1e-25 AT2G31820 868 / 0.0 Ankyrin repeat family protein (.1) Potri.007G099600 [exp] 102 / 6e-24 AT1G07710 745 / 0.0 Ankyrin repeat family protein (.1) Potri.006G214600 [exp] 100 / 2e-23 AT1G07710 565 / 0.0 Ankyrin repeat family protein (.1) Potri.016G080700 [exp] 99 / 5e-23 AT1G07710 570 / 0.0 Ankyrin repeat family protein (.1) Potri.007G145200 [exp] 98 / 2e-22 AT2G31820 751 / 0.0 Ankyrin repeat family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0465 [flax] [poplar] Ank PF00023 [flax] [poplar] Ank Ankyrin repeat
Representative CDS sequence Show only first row Show all	>Lus10030312 pacid=23152992 polypeptide=Lus10030312 locus=Lus10030312.g ID=Lus10030312.BGIv1.0 annot-version=v1.0 ATGGACTTGGAGAAAGGAATTGTTGTGACTCCTCAGAAACCCCACAACCCATTGGCTGAGATATCACCAACGCCTTCACCTTCCTCGGCATCAACAGCTC CAGCTCTGGTTCTCTCCAATTCAGGGAAAAGGATTGATCAAGCTGGCAAGAAGAAGTATGTCAAGCAAGTTACTGGCCGCCATAACGACACCGAGCTCCA CTTGGCAGCTCAACGTGGGGATTTGGCTGCTGTGAAGCAGATTCTAGATGATATTGATACTCAAATGGTGGGGACATTGACCGGCTCTGAGTTTGAAACT GAAGTTGCGGAGATTAGGGCGTCTGTTGTGAATGAGGTCAATGAGTTGGGAGAGACTGCCTTGTTTACTGCTGCTGATAGAGGACACCTTGAGGTGGTGA AGGAACTTTTGAAGTATTCGAGCAAAGAGTGCACTACTAGGAAGAACCGGTCAGGGTTTGATCCCCTCCATATCGCAGCGGTGCAAGGACACCATGCCAT TGTTCAGGTTCTACTTCATCACGACCCTAGCCTGAGCCAAACATACGGCATCTTCTTCATTTTCAATGCCATCGCACTCTTCACATCGTTAGCTGTTGTG GTGGTCCAAATCACGTTGGTTCGAGGAGAGACAAAAGCAGAAAAACGGGTCGTTGAAGTGATCAACAAGCTAATGTGGTTGGCTTCTGTGTGCACCTCGG TGGCGTTCATGGCTTCTTCTTACATAGTAGTTGGGAGAAAACACAAATGGGCTGCTATTCTGATAACGGTTGTTGGTGGAGTGATAATGGCTGGTGTTCT TGGGACCATGACTTACTATGTGGTGAAGTCGAAAAGGAACCGGTCCATGAGGAAGAAGGATAAGCAGGCAAGGAGAAGCGGGTCGAATTCGTGGCATCAC TCCGACTACTCCAACTCTGAAGTTGATCGAATTTACGCCCTTTAA
AA sequence Show only first row Show all	>Lus10030312 pacid=23152992 polypeptide=Lus10030312 locus=Lus10030312.g ID=Lus10030312.BGIv1.0 annot-version=v1.0 MDLEKGIVVTPQKPHNPLAEISPTPSPSSASTAPALVLSNSGKRIDQAGKKKYVKQVTGRHNDTELHLAAQRGDLAAVKQILDDIDTQMVGTLTGSEFET EVAEIRASVVNEVNELGETALFTAADRGHLEVVKELLKYSSKECTTRKNRSGFDPLHIAAVQGHHAIVQVLLHHDPSLSQTYGIFFIFNAIALFTSLAVV VVQITLVRGETKAEKRVVEVINKLMWLASVCTSVAFMASSYIVVGRKHKWAAILITVVGGVIMAGVLGTMTYYVVKSKRNRSMRKKDKQARRSGSNSWHH SDYSNSEVDRIYAL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G12360		ITN1	INCREASED TOLERANCE TO NACL, A...		Lus10030312 [exp]	0	1
AT5G07840		PIA1	phytochrome interacting ankyri...		Lus10018958 [exp]	2.2	0.9063
AT2G34690		ACD11	ACCELERATED CELL DEATH 11, Gly...		Lus10038537 [exp]	4.5	0.8739
AT2G46080			unknown protein		Lus10036385 [exp]	4.7	0.8919
AT1G12855			F-box family protein (.1)		Lus10029699 [exp]	5.2	0.8550
AT1G12855			F-box family protein (.1)		Lus10042738 [exp]	5.9	0.8736
AT3G18430			Calcium-binding EF-hand family...		Lus10022173 [exp]	9.6	0.8333
AT1G04760		ATVAMP726	vesicle-associated membrane pr...		Lus10036203 [exp]	10.5	0.8510
AT4G25670			unknown protein		Lus10039276 [exp]	10.8	0.8767
AT1G14140			Mitochondrial substrate carrie...		Lus10030443 [exp]	10.8	0.8467
AT3G29400		ATEXO70E1	exocyst subunit exo70 family p...		Lus10031956 [exp]	13.0	0.8388

Compare expression of checked genes

Lus10030312 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.