Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G55140 547 / 0 Pectin lyase-like superfamily protein (.1.2) AT3G09540 447 / 3e-158 Pectin lyase-like superfamily protein (.1) AT5G55720 188 / 1e-56 Pectin lyase-like superfamily protein (.1) AT1G30350 184 / 2e-55 Pectin lyase-like superfamily protein (.1) AT3G54920 167 / 1e-47 PMR6 powdery mildew resistant 6, Pectin lyase-like superfamily protein (.1) AT1G11920 165 / 1e-47 Pectin lyase-like superfamily protein (.1) AT5G63180 159 / 4e-45 Pectin lyase-like superfamily protein (.1) AT5G04310 157 / 1e-43 Pectin lyase-like superfamily protein (.1) AT4G13710 154 / 2e-43 Pectin lyase-like superfamily protein (.1.2) AT3G27400 154 / 2e-43 Pectin lyase-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10003307 [exp] 640 / 0 AT3G55140 562 / 0.0 Pectin lyase-like superfamily protein (.1.2) Lus10025290 [exp] 488 / 1e-174 AT3G55140 536 / 0.0 Pectin lyase-like superfamily protein (.1.2) Lus10024439 [exp] 478 / 4e-170 AT3G55140 534 / 0.0 Pectin lyase-like superfamily protein (.1.2) Lus10011258 [exp] 164 / 4e-47 AT1G11920 549 / 0.0 Pectin lyase-like superfamily protein (.1) Lus10011257 [exp] 164 / 5e-47 AT1G11920 530 / 0.0 Pectin lyase-like superfamily protein (.1) Lus10018430 [exp] 160 / 1e-45 AT1G11920 525 / 0.0 Pectin lyase-like superfamily protein (.1) Lus10036946 [exp] 155 / 1e-43 AT5G63180 627 / 0.0 Pectin lyase-like superfamily protein (.1) Lus10006456 [exp] 152 / 1e-42 AT1G67750 625 / 0.0 Pectate lyase family protein (.1) Lus10011400 [exp] 152 / 1e-42 AT1G67750 623 / 0.0 Pectate lyase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G048600 [exp] 532 / 0 AT3G55140 571 / 0.0 Pectin lyase-like superfamily protein (.1.2) Potri.006G214400 [exp] 518 / 0 AT3G55140 553 / 0.0 Pectin lyase-like superfamily protein (.1.2) Potri.016G080600 [exp] 516 / 0 AT3G55140 554 / 0.0 Pectin lyase-like superfamily protein (.1.2) Potri.011G008000 [exp] 172 / 1e-50 AT4G22080 540 / 0.0 root hair specific 14 (.1) Potri.011G008100 [exp] 170 / 1e-49 AT4G22080 504 / 2e-179 root hair specific 14 (.1) Potri.004G007300 [exp] 164 / 3e-47 AT4G22080 489 / 1e-173 root hair specific 14 (.1) Potri.011G093400 [exp] 155 / 7e-44 AT5G63180 509 / 0.0 Pectin lyase-like superfamily protein (.1) Potri.012G091500 [exp] 154 / 2e-43 AT4G24780 645 / 0.0 Pectin lyase-like superfamily protein (.1.2) Potri.015G087800 [exp] 152 / 1e-42 AT5G63180 657 / 0.0 Pectin lyase-like superfamily protein (.1) Potri.008G148800 [exp] 150 / 1e-41 AT5G15110 523 / 0.0 Pectate lyase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0268 [flax] [poplar] Pec_lyase-like PF00544 [flax] [poplar] Pectate_lyase_4 Pectate lyase
Representative CDS sequence Show only first row Show all	>Lus10030313 pacid=23153089 polypeptide=Lus10030313 locus=Lus10030313.g ID=Lus10030313.BGIv1.0 annot-version=v1.0 ATGACTTCACTACCATATGCCGATGCCGACGACCACATGAGAGCACTGGCTTGCCGGGCTGAAGGATTCGGCCGGACGGCCATCGGTGGTCTCCACGGCG CACTCTACTCCGTCACTTCCTTAGCAGATGATGGCCCCGGATCACTGCGTGAGGGCTGCCGAAGGAAGGAACCATTGTGGATTGTGTTCGATGTCTCCGG CACCATTGAGCTCAAGACATTCTTGAGCGTATCATCTTACAAGACGATCGATGGGCGCGGCCAGAGGATTAAGTTCACTGGGAAGGGGTTAAGGCTCAAG GAATGTGAGCATATCATCATCTGTAACCTCGAATTCGAAGGTGGGAGAGGGCATGACGTTGATGGGATCCAGATCAAGCCCAATTCGAGGCACATATGGA TCGATAGGTGCAGTCTCCGTGATTATGATGACGGGCTCATAGACATCACAAGACAAAGCACTGATATAACTGTCTCCAGGTGTTACTTTGCTCAACATGA CAAGACAATGCTTATTGGGGCAGACCCTACTCATGTGGGTGATAGATGCATCAGGGTGACCATTCACCATTGCTTCTTCGATGGAACGCGGCAGAGACAG CCTCGTCTTAGATTTGGGAAAGTTCATCTCTATAACAATTACACTAGGAATTGGGCAATCTACGCCGTCTGTGCTAGCGTTGAAGCTCAGATATACTCGG AATGCAATATCTACGAAGCAGGAGAGAAGAAAAAGACCTTTGAATATTACACAGAGAAGGCTGCTGATGCAGAAGAGGGCAAGTCCGGTTGCATAAAATC AGTTGGAGATGTGTTCCTGAATGGAGCCCTGCCATCACTTCAGCCAGGTATTGCTGAACATGCAGTGTTCCAACCAAGCGAGCATTATCAGAAGTGGACA GTGGAGACTCCTTCAGATTCTTTGAAGGAAGTTCTTCAAGTCTGTGCAGGTTGGCAAGCTATTCCTCGCCCAATACAGAACTAG
AA sequence Show only first row Show all	>Lus10030313 pacid=23153089 polypeptide=Lus10030313 locus=Lus10030313.g ID=Lus10030313.BGIv1.0 annot-version=v1.0 MTSLPYADADDHMRALACRAEGFGRTAIGGLHGALYSVTSLADDGPGSLREGCRRKEPLWIVFDVSGTIELKTFLSVSSYKTIDGRGQRIKFTGKGLRLK ECEHIIICNLEFEGGRGHDVDGIQIKPNSRHIWIDRCSLRDYDDGLIDITRQSTDITVSRCYFAQHDKTMLIGADPTHVGDRCIRVTIHHCFFDGTRQRQ PRLRFGKVHLYNNYTRNWAIYAVCASVEAQIYSECNIYEAGEKKKTFEYYTEKAADAEEGKSGCIKSVGDVFLNGALPSLQPGIAEHAVFQPSEHYQKWT VETPSDSLKEVLQVCAGWQAIPRPIQN

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G55140			Pectin lyase-like superfamily ...		Lus10030313 [exp]	0	1
AT5G24930	CO	COL4, ATCOL4	CONSTANS-like 4 (.1)		Lus10026909 [exp]	1.7	0.8835
AT5G24930	CO	COL4, ATCOL4	CONSTANS-like 4 (.1)		Lus10020105 [exp]	3.2	0.8751
AT3G52150			RNA-binding (RRM/RBD/RNP motif...		Lus10010262 [exp]	9.4	0.8576
AT4G00110		GAE3	UDP-D-glucuronate 4-epimerase ...		Lus10015876 [exp]	11.0	0.8411
AT4G38460		GGR	geranylgeranyl reductase (.1)		Lus10025096 [exp]	11.7	0.8619
AT2G33700			Protein phosphatase 2C family ...		Lus10016030 [exp]	12.5	0.8349
AT3G45210			Protein of unknown function, D...		Lus10000724 [exp]	14.1	0.8160
AT3G63540			Mog1/PsbP/DUF1795-like photosy...		Lus10016419 [exp]	15.3	0.8487
AT5G63860		UVR8	UVB-RESISTANCE 8, Regulator of...		Lus10039618 [exp]	16.1	0.8005
AT1G20340		PETE2, DRT112	PLASTOCYANIN 2, DNA-DAMAGE-REP...		Lus10004155 [exp]	20.5	0.8496

Compare expression of checked genes

Lus10030313 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.