Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G28110 474 / 1e-160 SCPL45 serine carboxypeptidase-like 45 (.1.2) AT2G33530 469 / 2e-158 SCPL46 serine carboxypeptidase-like 46 (.1) AT5G42230 334 / 4e-106 SCPL41 serine carboxypeptidase-like 41 (.1) AT1G43780 332 / 2e-105 SCPL44 serine carboxypeptidase-like 44 (.1) AT5G42240 321 / 2e-101 SCPL42 serine carboxypeptidase-like 42 (.1) AT3G02110 308 / 3e-96 SCPL25 serine carboxypeptidase-like 25 (.1) AT2G05850 303 / 3e-94 SCPL38 serine carboxypeptidase-like 38 (.1) AT4G30610 298 / 2e-92 SCPL24, BRS1 SERINE CARBOXYPEPTIDASE 24 PRECURSOR, BRI1 SUPPRESSOR 1, alpha/beta-Hydrolases superfamily protein (.1) AT2G12480 296 / 2e-92 SCPL43 serine carboxypeptidase-like 43 (.1.2) AT3G63470 298 / 3e-92 SCPL40 serine carboxypeptidase-like 40 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10023882 [exp] 722 / 0 AT1G48410 444 / 2e-146 ARGONAUTE 1, Stabilizer of iron transporter SufD / Polynucleotidyl transferase (.1.2.3) Lus10013395 [exp] 627 / 0 AT1G28110 534 / 0.0 serine carboxypeptidase-like 45 (.1.2) Lus10040324 [exp] 627 / 0 AT2G33530 532 / 0.0 serine carboxypeptidase-like 46 (.1) Lus10023446 [exp] 624 / 0 AT1G28110 520 / 0.0 serine carboxypeptidase-like 45 (.1.2) Lus10030317 [exp] 622 / 0 AT1G28110 501 / 2e-175 serine carboxypeptidase-like 45 (.1.2) Lus10021856 [exp] 622 / 0 AT1G28110 525 / 0.0 serine carboxypeptidase-like 45 (.1.2) Lus10003302 [exp] 621 / 0 AT1G28110 498 / 2e-174 serine carboxypeptidase-like 45 (.1.2) Lus10010331 [exp] 618 / 0 AT1G28110 540 / 0.0 serine carboxypeptidase-like 45 (.1.2) Lus10014388 [exp] 602 / 0 AT1G28110 373 / 8e-125 serine carboxypeptidase-like 45 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G034600 [exp] 567 / 0 AT1G28110 563 / 0.0 serine carboxypeptidase-like 45 (.1.2) Potri.016G034400 [exp] 565 / 0 AT1G28110 566 / 0.0 serine carboxypeptidase-like 45 (.1.2) Potri.006G036000 [exp] 561 / 0 AT1G28110 548 / 0.0 serine carboxypeptidase-like 45 (.1.2) Potri.006G036400 [exp] 518 / 3e-177 AT2G33530 547 / 0.0 serine carboxypeptidase-like 46 (.1) Potri.006G036500 [exp] 514 / 4e-176 AT1G28110 619 / 0.0 serine carboxypeptidase-like 45 (.1.2) Potri.012G105500 [exp] 466 / 3e-157 AT1G28110 751 / 0.0 serine carboxypeptidase-like 45 (.1.2) Potri.001G065900 [exp] 462 / 5e-156 AT1G28110 766 / 0.0 serine carboxypeptidase-like 45 (.1.2) Potri.003G164000 [exp] 462 / 7e-156 AT1G28110 758 / 0.0 serine carboxypeptidase-like 45 (.1.2) Potri.015G104700 [exp] 431 / 9e-144 AT1G28110 715 / 0.0 serine carboxypeptidase-like 45 (.1.2) Potri.002G071800 [exp] 314 / 1e-98 AT5G42240 742 / 0.0 serine carboxypeptidase-like 42 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0028 [flax] [poplar] AB_hydrolase PF00450 [flax] [poplar] Peptidase_S10 Serine carboxypeptidase
Representative CDS sequence Show only first row Show all	>Lus10030315 pacid=23153115 polypeptide=Lus10030315 locus=Lus10030315.g ID=Lus10030315.BGIv1.0 annot-version=v1.0 ATGAGGAGCTCTCGATCATGGATTGTTATGTTGATAATTTCTGCTACGTTATCAGCAATTTTCACAACAGTCGTTGAGTCATCATCATCATCAAAAGGAG CTGACAAGATAGTGAAGCTTCCAGGACAGCAAGATGATGTCAGCTTCCAACAGTATGCAGGGTATGTGACTGTTGATGAAACCCAGAAGAGGCAACTTTT CTACTACTTTGTTGAAGCTGAGACTAACTCCTCTTCAAAGCCTCTCGTTCTCTGGCTCAATGGAGGGCCAGGATGTTCCTCAGTTGGAGCAGGTGCTTTC ACTGAGCACGGTCCTTTCAGGCCACATGATGGAGGGGCCAATCTGGTGAGAAATCACTATAGCTGGAACAAAGAAGCAAACATGATATACTTAGAATCTC CAGCTGGAGTTGGTTTCTCGTATTCTGTCAACCAATCATTCTATGACTTGGTAAATGATACCATAACTGCCAATGACAACTTGGTGTTCATACACCAATG GCTACTCAAGTTTCCTGAATACAATAACAGAGATTTCTACATCACTGGAGAGAGCTATGCTGGTCACTATGTACCCCAAATAGCACAGCTATTTCTGGAA TCAGGAAAAAATCTCAACTTGAAAGCCATAGCTATAGGAAACCCATTGTTGGAATTCGACACAGATTTCAACGGGGAAGGAAAGTACTACTGGTCGCACA GCTTGATATCAGACAACACCTACCGCCTTATCAACACAATCTGCAACACCTCCCAGCTCAGGAGAGAGGCCACTTCAGGCATACTTTCCAAGCCATGCAT AACTGTTGCAACTCGGATCGCGTCGGAAATTCCTCCCAGAACTTCGTTCAATAATTATGATGTCACTTCAGATGTTTGCTTAGATCAGACCAAGTCTGTA GCTGCAGCTTCACAGGAGACTTTAGCTGCAGCTTTCCACCCATTTTCTGCCCTCAGGTCCAGCCAAGTCGCTCGCAGGAATTTCAAATCAGAAGAATCAG TAGACGTCTGTACAGAAGATGATACGGGGGCTTACTTGAACAGAAAAGATGTTCAGAAGGCTATGCATGCCAAGCTCGTAAACATCCCGGGCTGGAATTC GTGTAGCAATGTTGTTAATTATGACTACGGCAATTTGGAGACTCCAACGATCGGAGTGCTGGGATCATTGGTGGGCTCAGGGATCCGAGTACTAGTTTAC AGTGGGGATCAAGATGCGGTGCTCCCTTTCATAGGGACGAAGGGTTTGGTCAATCGTCTCGCCAAACAGGCGGGATTGAACACGACTGTGTCATACAAAG CATGGTTTGATGATGACAAACAGGTTGGTGGATGGACACGAGTGTATGGGGAGAATAAGCTAGAATTTGCAACTATCAGAGGAGCGTTGGAGCACAATGG TGATTCCGATGCCGGCTTCTTCCTAACTGGAGGGTATGTCGCCTGTCTATTCATCTTTCCCCCACACTTGCAGCCCTGTCTATTCATCTGTTCCCCAGAC TTGAACTCCCCAGATGTGTCTACTCCTCTTGGCCTCCACTTTGTTGGGAAGCTCATTAGGGCTGGGAGTCCAAACCACATTGAGAGTAAGAGTTCGGTTG CACCAGTTCTGAACTTGACTGTTGTTGATGCAGATGGCCTGGAAGTCGATGTTTCTCTCTGGTCTGACCTTTCACATGTTATAGATGCTGATTTCGTTGT TCTAGATGATGTTGCCAACCAAGTCATCGTCGCTTTTTCGGGATTCCGCATTGGGAAGTTTCAAAGACTTCTGCCTATAGTGGTGAGGCGAGTCGAGTCT TTTGTGACCTCTAATACCGCTTGGTGGACTCTCTTAGGGCATTGTACGGTCAAACCCTTTTTTAGTGTTCCTAATGCAACTGCTCATACAAAAGTGTGCA CAATTTGCTCTTGCAGTTCTATATATCTTGCGACCATTTCATGTCCGCTTCTTTACAGGTTCACAGCTCAACCACGCACAATCACCATTGTTGCTCCAAA GTTTCCTACCCCTGAAAAACCGAAACAACACCTTGCAGCCTCAAAGCGCACCATCCACGAGTTGTTGGCATTGTATACGAGAGGTGGAGACTCGGAACCA TGCTACCGTTGTCGGACCACCATACTTGGCTTTGATGAACACCAAAATTGGTACTACAATGCTTGCTTGAAATGTTCTATATCAGTTGTGGCTAATGGCA ATGACTTCTGGTGCAAAAACCATGATACAGTCCTTGCTGCTGACATAACATACATGTATCATCTGAAATTCGCAGTTGGTGATGACACGACTGAGACAAC TTTTGTTCTCTTGGGTCTTGCTGATGATCGAATTCTTCCAATCAGCACCGCTGAATTGGCATTGGCATACCCGTATGATTATGGAGAAATGCCCCCCCTC TATTAA
AA sequence Show only first row Show all	>Lus10030315 pacid=23153115 polypeptide=Lus10030315 locus=Lus10030315.g ID=Lus10030315.BGIv1.0 annot-version=v1.0 MRSSRSWIVMLIISATLSAIFTTVVESSSSSKGADKIVKLPGQQDDVSFQQYAGYVTVDETQKRQLFYYFVEAETNSSSKPLVLWLNGGPGCSSVGAGAF TEHGPFRPHDGGANLVRNHYSWNKEANMIYLESPAGVGFSYSVNQSFYDLVNDTITANDNLVFIHQWLLKFPEYNNRDFYITGESYAGHYVPQIAQLFLE SGKNLNLKAIAIGNPLLEFDTDFNGEGKYYWSHSLISDNTYRLINTICNTSQLRREATSGILSKPCITVATRIASEIPPRTSFNNYDVTSDVCLDQTKSV AAASQETLAAAFHPFSALRSSQVARRNFKSEESVDVCTEDDTGAYLNRKDVQKAMHAKLVNIPGWNSCSNVVNYDYGNLETPTIGVLGSLVGSGIRVLVY SGDQDAVLPFIGTKGLVNRLAKQAGLNTTVSYKAWFDDDKQVGGWTRVYGENKLEFATIRGALEHNGDSDAGFFLTGGYVACLFIFPPHLQPCLFICSPD LNSPDVSTPLGLHFVGKLIRAGSPNHIESKSSVAPVLNLTVVDADGLEVDVSLWSDLSHVIDADFVVLDDVANQVIVAFSGFRIGKFQRLLPIVVRRVES FVTSNTAWWTLLGHCTVKPFFSVPNATAHTKVCTICSCSSIYLATISCPLLYRFTAQPRTITIVAPKFPTPEKPKQHLAASKRTIHELLALYTRGGDSEP CYRCRTTILGFDEHQNWYYNACLKCSISVVANGNDFWCKNHDTVLAADITYMYHLKFAVGDDTTETTFVLLGLADDRILPISTAELALAYPYDYGEMPPL Y

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G28110		SCPL45	serine carboxypeptidase-like 4...		Lus10030315 [exp]	0	1
AT5G02440			unknown protein		Lus10025345 [exp]	3.6	0.8147
AT5G13750		ZIFL1	zinc induced facilitator-like ...		Lus10034794 [exp]	11.3	0.7513
AT5G43270	SBP	SPL2	squamosa promoter binding prot...		Lus10040595 [exp]	12.7	0.7553
AT5G49800			Polyketide cyclase/dehydrase a...		Lus10026274 [exp]	15.0	0.7350
AT2G34560			P-loop containing nucleoside t...		Lus10038499 [exp]	20.4	0.7646
AT2G03500	GARP		Homeodomain-like superfamily p...		Lus10027927 [exp]	21.3	0.7127
AT2G28630		KCS12	3-ketoacyl-CoA synthase 12 (.1...		Lus10004918 [exp]	25.2	0.7422
AT1G53035			unknown protein		Lus10018600 [exp]	27.6	0.7042
AT5G13460		IQD11	IQ-domain 11 (.1)		Lus10039573 [exp]	31.7	0.7412
AT3G14980			Acyl-CoA N-acyltransferase wit...		Lus10026374 [exp]	33.8	0.7399

Compare expression of checked genes

Lus10030315 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.