Plant FIBer expression Database

Lus10030316 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues

No hit found

Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10026445
[exp]
315 / 3e-105 AT4G19130 41 / 0.002 Replication factor-A protein 1-related (.1)
Lus10029488
[exp]
67 / 1e-12 ND /
Poplar homologues

No hit found
PFAM info
Representative CDS sequence
>Lus10030316 pacid=23152978 polypeptide=Lus10030316 locus=Lus10030316.g ID=Lus10030316.BGIv1.0 annot-version=v1.0
ATGTTCATGCTAACACATATTGTGACTTCGTTGTTACTAAGATTTGGGGCTTGGTTGCCTCTCACCAACAACTCCTCTCCCAATTTCCTCCACCTCCTCC
TCCTATATCTCCCAGCTGTCCCAAACTTCTCAAACCAAGCAACGGGGTCTGCAATCTTTCCTATGCCGCCACTTAAGTCTTCTGGGCCTGCTAGCAAACC
GTTGAAGGCCACACTCGTTCATCCTTCACCTTACCAAAATGAAGATGATGTTTCCCTCGCAACATTGATACGACCAAAACAAACCAAGGCCACCACCGCG
CACACCAAAATGACAATCTTTACACCTCCACCCATAACCATTACAGTCACCCCTACTGTCCAGGAGCAAACACCTTTGGTCCGAACCCCTCTTCCAAAGG
TCAAGCTCGAAGGATTTCCTAAGACTGCACCAGCTTGCCTCCCTGTCTTCCAAACACCCACCAACAATCCTATTAATCGAAAAGCTCCTGGCCATGACCA
TGATTCATCGCTGATGGATGCTACTAGCCAAGATGATTTCCCGCTTGCATCTTTGGTCTGTTCGAAGCGGTCCCGAAACGCTGCTTTGCAGACCAAATTT
CCAAGCTCTGATGCTGCACCAGCTGGCCACATTGCTCAAACCCCTGCTCAGCGTGAATCAGATGCTCTGTGTGCATCCCCTCTTGCAAAGGTTAAGCAAG
AACGCCTTTCTGGAACTCCGGCTACTCCTACTTTTGCGTTCCAAACAGCAGTCGCCAACCTTGTTAAACAACCGACTCCTTCCCAGCACACGAAGTCACC
CTCCCTTCCTAGAAAACGGGTGCAAAAGCGTCTCTTCACGGAATAG
AA sequence
>Lus10030316 pacid=23152978 polypeptide=Lus10030316 locus=Lus10030316.g ID=Lus10030316.BGIv1.0 annot-version=v1.0
MFMLTHIVTSLLLRFGAWLPLTNNSSPNFLHLLLLYLPAVPNFSNQATGSAIFPMPPLKSSGPASKPLKATLVHPSPYQNEDDVSLATLIRPKQTKATTA
HTKMTIFTPPPITITVTPTVQEQTPLVRTPLPKVKLEGFPKTAPACLPVFQTPTNNPINRKAPGHDHDSSLMDATSQDDFPLASLVCSKRSRNAALQTKF
PSSDAAPAGHIAQTPAQRESDALCASPLAKVKQERLSGTPATPTFAFQTAVANLVKQPTPSQHTKSPSLPRKRVQKRLFTE

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
Lus10030316
[exp]
0 1
AT4G34950 Major facilitator superfamily ... Lus10010805
[exp]
1.4 0.8318
AT1G05170 Galactosyltransferase family p... Lus10001148
[exp]
3.0 0.8433
AT4G37640 ACA2 calcium ATPase 2 (.1) Lus10019300
[exp]
8.1 0.8066
AT1G15380 GLYI4 glyoxylase I 4, Lactoylglutath... Lus10025971
[exp]
9.3 0.8299
AT1G05170 Galactosyltransferase family p... Lus10002079
[exp]
15.2 0.8018
AT3G60460 MYB DUO1 DUO POLLEN 1, myb-like HTH tra... Lus10009780
[exp]
17.3 0.8153
AT2G37550 ASP1, AGD7 yeast pde1 suppressor 1, ARF-G... Lus10036211
[exp]
21.7 0.7153
AT2G32460 MYB ATMYB101, AtM1 ARABIDOPSIS THALIANA MYB 1, my... Lus10040063
[exp]
22.8 0.7813
AT3G44900 ATCHX4 cation/H+ exchanger 4, cation/... Lus10006166
[exp]
24.5 0.8060
AT5G54490 PBP1 pinoid-binding protein 1 (.1) Lus10036734
[exp]
25.6 0.8014

Lus10030316 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.