Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G28110 450 / 9e-156 SCPL45 serine carboxypeptidase-like 45 (.1.2) AT2G33530 444 / 3e-153 SCPL46 serine carboxypeptidase-like 46 (.1) AT1G43780 330 / 2e-108 SCPL44 serine carboxypeptidase-like 44 (.1) AT5G42230 328 / 8e-108 SCPL41 serine carboxypeptidase-like 41 (.1) AT5G42240 314 / 2e-102 SCPL42 serine carboxypeptidase-like 42 (.1) AT2G12480 303 / 2e-98 SCPL43 serine carboxypeptidase-like 43 (.1.2) AT2G35780 286 / 1e-91 SCPL26 serine carboxypeptidase-like 26 (.1) AT4G30610 282 / 7e-90 SCPL24, BRS1 SERINE CARBOXYPEPTIDASE 24 PRECURSOR, BRI1 SUPPRESSOR 1, alpha/beta-Hydrolases superfamily protein (.1) AT3G02110 280 / 3e-89 SCPL25 serine carboxypeptidase-like 25 (.1) AT2G35770 278 / 1e-88 SCPL28 serine carboxypeptidase-like 28 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10003302 [exp] 886 / 0 AT1G28110 498 / 2e-174 serine carboxypeptidase-like 45 (.1.2) Lus10013395 [exp] 600 / 0 AT1G28110 534 / 0.0 serine carboxypeptidase-like 45 (.1.2) Lus10010331 [exp] 598 / 0 AT1G28110 540 / 0.0 serine carboxypeptidase-like 45 (.1.2) Lus10021856 [exp] 597 / 0 AT1G28110 525 / 0.0 serine carboxypeptidase-like 45 (.1.2) Lus10023446 [exp] 588 / 0 AT1G28110 520 / 0.0 serine carboxypeptidase-like 45 (.1.2) Lus10040324 [exp] 584 / 0 AT2G33530 532 / 0.0 serine carboxypeptidase-like 46 (.1) Lus10030315 [exp] 561 / 0 AT1G28110 476 / 3e-161 serine carboxypeptidase-like 45 (.1.2) Lus10023882 [exp] 544 / 0 AT1G48410 444 / 2e-146 ARGONAUTE 1, Stabilizer of iron transporter SufD / Polynucleotidyl transferase (.1.2.3) Lus10040326 [exp] 509 / 3e-179 AT2G33530 436 / 2e-150 serine carboxypeptidase-like 46 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G034400 [exp] 519 / 0 AT1G28110 566 / 0.0 serine carboxypeptidase-like 45 (.1.2) Potri.006G036000 [exp] 517 / 0 AT1G28110 548 / 0.0 serine carboxypeptidase-like 45 (.1.2) Potri.006G036500 [exp] 514 / 0 AT1G28110 619 / 0.0 serine carboxypeptidase-like 45 (.1.2) Potri.016G034600 [exp] 509 / 1e-178 AT1G28110 563 / 0.0 serine carboxypeptidase-like 45 (.1.2) Potri.006G036400 [exp] 486 / 2e-169 AT2G33530 547 / 0.0 serine carboxypeptidase-like 46 (.1) Potri.003G164000 [exp] 449 / 3e-155 AT1G28110 758 / 0.0 serine carboxypeptidase-like 45 (.1.2) Potri.001G065900 [exp] 449 / 3e-155 AT1G28110 766 / 0.0 serine carboxypeptidase-like 45 (.1.2) Potri.012G105500 [exp] 443 / 6e-153 AT1G28110 751 / 0.0 serine carboxypeptidase-like 45 (.1.2) Potri.015G104700 [exp] 422 / 9e-145 AT1G28110 715 / 0.0 serine carboxypeptidase-like 45 (.1.2) Potri.002G071800 [exp] 310 / 2e-100 AT5G42240 742 / 0.0 serine carboxypeptidase-like 42 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0028 [flax] [poplar] AB_hydrolase PF00450 [flax] [poplar] Peptidase_S10 Serine carboxypeptidase
Representative CDS sequence Show only first row Show all	>Lus10030317 pacid=23153105 polypeptide=Lus10030317 locus=Lus10030317.g ID=Lus10030317.BGIv1.0 annot-version=v1.0 ATGGCAGGTTCTCGGTCTCGGATATGGATTGTTATGTTGACGATCAGTATCGCAACATTAATAGAGCCATCAGGGGCATACCAAGAGGATGACAAGATAG TGAAGCTGCCAGGACAGCCAGATGTTAGCTTCCAACAGTATGCAGGGTACGTGACTGTTGATGAAACCCAGCAAAGGAATCTCTTCTACTACTTTGTTGA AGCCGAGGTTAACTCCAACTCAAAGCCTCTCGTCCTCTGGCTCAACGGAGGGCCCGGCTGCTCTTCTGTTGGTGGTGGAGCTTTCACGGAACACGGACCT TTCAAGCCAAATGCAGCTGGATCATTGGTAAAGAATGACTACAGTTGGAACAGAGAAGCAAACATAATATACCTGGAATCTCCGGCCGGAGTTGGTTTCT CGTATTCCGTCAACACTTCTTTCTATACATCGGTTAATGATGACATAACAGCGCATGACAGCTTAGTGTTCCTGCAACGATGGCTGCTCAAGTTTCCTGA ATACAAGAATAGCGACCTTTTCATTGCTGGAGAGAGCTATGCCGGTCATTATGTGCCACAACTAGCACAGCTAATCGTGGAGTCAAGGTCAAATCTCCGG TTGAAAGCCATCTCTATAGGAAATCCAACGTTGGAGTTCAACGCAGATTTCAACGGGGAAGGGAAGTTCTTTTGGTCACACGGAATAATCTCAGATGACA CTAATCACCTTGTGGAGACAACCTGCAACACTTCACAGCTCAGGAGACAGGCGATGACCGGAAACTTTTCTGAGCCCTGCAAAATCGTCGCAGCTCGCAT CGCTGCTGAAGTTCCTGACCGTGGATTTGATAGATATGATGTCACTTCTGATGTCTGTTCGTCGGACACTGCTGGACCTGGAGCTCCCATTCCCTCTCTG GAATCCATTTTCCATCCATTTTCATCTCTCCGGTACAATCAAGTTGCCCACTCAGCTTTGAAAACTGGAGAGTCCGTAGACGTGTGTGCACAAGATGAGA TGACCAAGTATTTGAACAGAAAAGATGTTCAGGAATCTATGCATGCCCGGCTCGTGGGTGTCAATAATTGGACTGCATGCACCCACCGTGTGAAGTATGA GCAGACCGATTTGGAAAATGCAAGTATAGGAGTGGTGGGTTCATTAGTGAGCTCGGGCATCCGAGTGTTGGTTTACAGCGGGGATCAAGACTCGGCTGTC CCGTTTATAGGGACTAGAGTTGTGGTGAATAGTCTGGCGAAAAGTATGGGATTGAACACCACTGTTTCTTACAAGCCATGGCTAGATGATGACCACCAAA TAGGTGGATGGACACAAGTATATGGGAAGAACAGACTTGCATATGCAACAATCAGAGGAGCTTCTCACATGGCACCCTTATCCTCTCCAAAGAGGTCACT CACATTGTTTGCTACGTTTCTATCTGGGAAACAATTGGCATCTTAA
AA sequence Show only first row Show all	>Lus10030317 pacid=23153105 polypeptide=Lus10030317 locus=Lus10030317.g ID=Lus10030317.BGIv1.0 annot-version=v1.0 MAGSRSRIWIVMLTISIATLIEPSGAYQEDDKIVKLPGQPDVSFQQYAGYVTVDETQQRNLFYYFVEAEVNSNSKPLVLWLNGGPGCSSVGGGAFTEHGP FKPNAAGSLVKNDYSWNREANIIYLESPAGVGFSYSVNTSFYTSVNDDITAHDSLVFLQRWLLKFPEYKNSDLFIAGESYAGHYVPQLAQLIVESRSNLR LKAISIGNPTLEFNADFNGEGKFFWSHGIISDDTNHLVETTCNTSQLRRQAMTGNFSEPCKIVAARIAAEVPDRGFDRYDVTSDVCSSDTAGPGAPIPSL ESIFHPFSSLRYNQVAHSALKTGESVDVCAQDEMTKYLNRKDVQESMHARLVGVNNWTACTHRVKYEQTDLENASIGVVGSLVSSGIRVLVYSGDQDSAV PFIGTRVVVNSLAKSMGLNTTVSYKPWLDDDHQIGGWTQVYGKNRLAYATIRGASHMAPLSSPKRSLTLFATFLSGKQLAS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G28110		SCPL45	serine carboxypeptidase-like 4...		Lus10030317 [exp]	0	1
AT1G23220			Dynein light chain type 1 fami...		Lus10031734 [exp]	11.1	0.7402
AT2G27110	FAR1_related	FRS3	FAR1-related sequence 3 (.1.2....		Lus10026767 [exp]	33.7	0.6998
AT5G62360			Plant invertase/pectin methyle...		Lus10032233 [exp]	40.8	0.7013
AT5G65520			Tetratricopeptide repeat (TPR)...		Lus10025714 [exp]	41.4	0.6873
AT5G02260		ATHEXPALPHA1.10...	expansin A9 (.1)		Lus10033801 [exp]	50.2	0.6725
AT1G72020			unknown protein		Lus10009443 [exp]	60.9	0.6432
AT1G25580	NAC	ANAC008, SOG1	SUPPRESSOR OF GAMMA RADIATION ...		Lus10021708 [exp]	61.0	0.6741
AT5G19090			Heavy metal transport/detoxifi...		Lus10031514 [exp]	69.9	0.6794
AT1G74240			Mitochondrial substrate carrie...		Lus10017849 [exp]	75.1	0.6729
AT1G47670			Transmembrane amino acid trans...		Lus10012281 [exp]	83.1	0.6499

Compare expression of checked genes

Lus10030317 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.