Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G55230 212 / 5e-68 Disease resistance-responsive (dirigent-like protein) family protein (.1) AT2G39430 200 / 3e-63 Disease resistance-responsive (dirigent-like protein) family protein (.1) AT1G07730 135 / 2e-37 Disease resistance-responsive (dirigent-like protein) family protein (.2) AT2G28670 122 / 5e-34 ESB1 ENHANCED SUBERIN 1, Disease resistance-responsive (dirigent-like protein) family protein (.1), Disease resistance-responsive (dirigent-like protein) family protein (.2) AT4G13580 94 / 4e-23 Disease resistance-responsive (dirigent-like protein) family protein (.1) AT3G24020 93 / 1e-22 Disease resistance-responsive (dirigent-like protein) family protein (.1) AT2G28671 45 / 1e-05 unknown protein AT5G42500 41 / 0.0003 Disease resistance-responsive (dirigent-like protein) family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10003301 [exp] 299 / 1e-98 AT3G55230 254 / 2e-80 Disease resistance-responsive (dirigent-like protein) family protein (.1) Lus10006317 [exp] 124 / 5e-34 AT2G28670 271 / 1e-89 ENHANCED SUBERIN 1, Disease resistance-responsive (dirigent-like protein) family protein (.1), Disease resistance-responsive (dirigent-like protein) family protein (.2) Lus10029585 [exp] 99 / 4e-26 AT2G28670 166 / 6e-53 ENHANCED SUBERIN 1, Disease resistance-responsive (dirigent-like protein) family protein (.1), Disease resistance-responsive (dirigent-like protein) family protein (.2) Lus10023689 [exp] 97 / 4e-24 AT3G24020 336 / 1e-117 Disease resistance-responsive (dirigent-like protein) family protein (.1) Lus10011767 [exp] 97 / 4e-24 AT3G24020 339 / 7e-119 Disease resistance-responsive (dirigent-like protein) family protein (.1) Lus10034479 [exp] 47 / 4e-06 AT2G21100 189 / 9e-62 Disease resistance-responsive (dirigent-like protein) family protein (.1) Lus10016231 [exp] 44 / 3e-05 AT1G65870 149 / 8e-46 Disease resistance-responsive (dirigent-like protein) family protein (.1) Lus10025064 [exp] 44 / 3e-05 AT2G21100 197 / 9e-65 Disease resistance-responsive (dirigent-like protein) family protein (.1) Lus10034476 [exp] 43 / 9e-05 AT2G21100 220 / 1e-73 Disease resistance-responsive (dirigent-like protein) family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G049100 [exp] 223 / 4e-71 AT2G39430 251 / 6e-81 Disease resistance-responsive (dirigent-like protein) family protein (.1) Potri.010G211900 [exp] 219 / 6e-70 AT2G39430 249 / 3e-80 Disease resistance-responsive (dirigent-like protein) family protein (.1) Potri.010G211800 [exp] 138 / 2e-39 AT2G28670 257 / 6e-83 ENHANCED SUBERIN 1, Disease resistance-responsive (dirigent-like protein) family protein (.1), Disease resistance-responsive (dirigent-like protein) family protein (.2) Potri.008G049200 [exp] 134 / 1e-37 AT2G28670 276 / 2e-90 ENHANCED SUBERIN 1, Disease resistance-responsive (dirigent-like protein) family protein (.1), Disease resistance-responsive (dirigent-like protein) family protein (.2) Potri.003G174300 [exp] 95 / 3e-23 AT3G24020 315 / 2e-109 Disease resistance-responsive (dirigent-like protein) family protein (.1) Potri.001G054100 [exp] 95 / 5e-23 AT4G13580 308 / 3e-106 Disease resistance-responsive (dirigent-like protein) family protein (.1) Potri.001G054000 [exp] 82 / 2e-18 AT3G24020 352 / 5e-124 Disease resistance-responsive (dirigent-like protein) family protein (.1) Potri.010G212000 [exp] 64 / 7e-12 AT1G07730 103 / 1e-25 Disease resistance-responsive (dirigent-like protein) family protein (.2) Potri.003G216400 [exp] 47 / 2e-06 AT1G58170 225 / 1e-75 Disease resistance-responsive (dirigent-like protein) family protein (.1) Potri.003G216300 [exp] 46 / 6e-06 AT1G55210 221 / 5e-74 Disease resistance-responsive (dirigent-like protein) family protein (.1), Disease resistance-responsive (dirigent-like protein) family protein (.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0650 [flax] [poplar] AOC_barrel PF03018 [flax] [poplar] Dirigent Dirigent-like protein
Representative CDS sequence Show only first row Show all	>Lus10030318 pacid=23153072 polypeptide=Lus10030318 locus=Lus10030318.g ID=Lus10030318.BGIv1.0 annot-version=v1.0 ATGCACGACATCCTAGGAGGATCCCGGCCGTCAGCGAGAGTGGTAGCCGGAATAATCGCGAGGACGGACATCAACGGGATCCCATTCTCGGTCCCGAACA ACAACATCTTCCCACTCCAAGGGGGAACCCCGCTGCTGAATCCTAACAACATCAACAACTTAATAAACCCGAACACCGCCCCCTTAATGACCGGGCTCAA TCCTAGCGCCACGTCCGGGCAAGCAAACACCGTCCTCCAGAACGCAGGAAGCAGCGGCGTGGTGAACCCGCCCTCCAACAGCCAGCCGTTCGTTACGGCA GGGCGGGCGGGGGGGGGGGCGGCAGGGCAGCTGCCGGCGGGGCTGACACTGCAGAAGCTGATGTTCGGGTCGATCACGGTGTTCGATGACGAATTAACGG AAGGGCATGAGTTGGGTTCGGCGGTGCTAGGGAGAGCTCAAGGGTTTTACCTCGCGAGCTCGGTGGACGGGACCAGCCACACGATGTCGATGACTCTGAT GATGCACGAGCACGGTGGTGAGCATGAGCACGAGGGTCATGAAGACACAATCAGCTTCTTTGGGGTTCACAGGAATGCGGCGCCGGTATCGAGTGTGGCG GTGGTTGGCGGGACAGGAAAGTATGAGGATGCTAAAGGGTATGCGACGATAGAGGCGATTCATCAGGAGGATCAGCATGTCACTGATGGTGTTGATACTA TTACCCATATCAATGTGTATCTTTCCTACTGA
AA sequence Show only first row Show all	>Lus10030318 pacid=23153072 polypeptide=Lus10030318 locus=Lus10030318.g ID=Lus10030318.BGIv1.0 annot-version=v1.0 MHDILGGSRPSARVVAGIIARTDINGIPFSVPNNNIFPLQGGTPLLNPNNINNLINPNTAPLMTGLNPSATSGQANTVLQNAGSSGVVNPPSNSQPFVTA GRAGGGAAGQLPAGLTLQKLMFGSITVFDDELTEGHELGSAVLGRAQGFYLASSVDGTSHTMSMTLMMHEHGGEHEHEGHEDTISFFGVHRNAAPVSSVA VVGGTGKYEDAKGYATIEAIHQEDQHVTDGVDTITHINVYLSY

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G55230			Disease resistance-responsive ...		Lus10030318 [exp]	0	1
AT2G28670		ESB1	ENHANCED SUBERIN 1, Disease re...		Lus10029585 [exp]	1.4	0.9840
AT2G28670		ESB1	ENHANCED SUBERIN 1, Disease re...		Lus10006317 [exp]	2.0	0.9811
AT5G56040			Leucine-rich receptor-like pro...		Lus10018094 [exp]	3.5	0.9541
AT3G15730		PLDALPHA1	phospholipase D alpha 1 (.1)		Lus10018575 [exp]	3.5	0.9687
AT5G19200		TSC10B	TSC10B, NAD(P)-binding Rossman...		Lus10010510 [exp]	4.2	0.9526
AT3G06060		TSC10A	TSC10A, NAD(P)-binding Rossman...		Lus10010509 [exp]	4.9	0.9535
AT2G45430	AT-hook	AHL22	AT-hook motif nuclear-localize...		Lus10006664 [exp]	5.0	0.9645
AT1G22360		ATUGT85A2, AT2	UDP-glucosyl transferase 85A2 ...		Lus10041055 [exp]	5.9	0.9535
AT5G62620			Galactosyltransferase family p...		Lus10004256 [exp]	6.0	0.9494
AT3G15730		PLDALPHA1	phospholipase D alpha 1 (.1)		Lus10039806 [exp]	6.6	0.9685

Compare expression of checked genes

Lus10030318 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.