Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	No hit found
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Poplar homologues Show only best Show top 10	No hit found
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10030319 pacid=23153071 polypeptide=Lus10030319 locus=Lus10030319.g ID=Lus10030319.BGIv1.0 annot-version=v1.0 ATGGCATGTTGCTCTGATCTTTGCCATCCCGTTCTTCCGCGATGGAGTCTCCAACTTATAGGCCTTCCTTTTCCACCCACTGCTGCAGCAGAGGAGGATT CCGATTTGCCAGAGTCCGTTGGGTTTAGTGTCCAAATTGAAGTGAAGGTTGGATCTACAATCTCAGTATGTTGCTTCTTTTCGCTCGCGGAGGAACAATC TAAACGATGTTACACACGTGTCAGTATTGTGCTTTTGCACTTCATGCCTCCTTGCTTGACTCATCTTATTCACTTCATGTTGTTTTTCCTGCCCATCCTT CTTAGGGCGATGAGAGGAAACGACAAGAGAGAAGGGCAGAGTTTAGTGAGAGATAAAGTGAAGAGAAGGAGGGACAATGAGCAATATAAGCAGCAGAGGG GAAGCAAGGGAAAACCCCATTGA
AA sequence Show only first row Show all	>Lus10030319 pacid=23153071 polypeptide=Lus10030319 locus=Lus10030319.g ID=Lus10030319.BGIv1.0 annot-version=v1.0 MACCSDLCHPVLPRWSLQLIGLPFPPTAAAEEDSDLPESVGFSVQIEVKVGSTISVCCFFSLAEEQSKRCYTRVSIVLLHFMPPCLTHLIHFMLFFLPIL LRAMRGNDKREGQSLVRDKVKRRRDNEQYKQQRGSKGKPH

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
					Lus10030319 [exp]	0	1
AT3G09510			Ribonuclease H-like superfamil...		Lus10000349 [exp]	3.9	0.8845
AT1G80660		AHA9	H\(+\)-ATPase 9, H\(+\)-ATPase...		Lus10024105 [exp]	10.4	0.8817
AT5G14070		ROXY2	Thioredoxin superfamily protei...		Lus10023295 [exp]	18.2	0.8624
AT5G01870			Bifunctional inhibitor/lipid-t...		Lus10025148 [exp]	27.9	0.8312
AT1G14430			glyoxal oxidase-related protei...		Lus10030798 [exp]	28.5	0.8242
AT4G25650		TIC55-IV, PTC52...	TRANSLOCON AT THE INNER ENVELO...		Lus10013915 [exp]	31.0	0.8325
AT5G18910			Protein kinase superfamily pro...		Lus10034000 [exp]	31.7	0.7389
AT5G07280		EXS, EMS1	EXTRA SPOROGENOUS CELLS, EXCES...		Lus10014996 [exp]	32.2	0.8554
AT2G42840		PDF1	protodermal factor 1 (.1)		Lus10007351 [exp]	35.1	0.8345
AT5G65590	DOF	AtDof5,7	Dof-type zinc finger DNA-bindi...		Lus10025707 [exp]	38.1	0.8295

Compare expression of checked genes

Lus10030319 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.