Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G55260 773 / 0 HEXO1, ATHEX2 beta-hexosaminidase 1 (.1) AT1G65590 524 / 0 HEXO3, ATHEX1 beta-hexosaminidase 3 (.1) AT1G05590 221 / 4e-64 HEXO2, ATHEX3 BETA-HEXOSAMINIDASE 3, beta-hexosaminidase 2 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10003292 [exp] 1202 / 0 AT3G55260 781 / 0.0 beta-hexosaminidase 1 (.1) Lus10022251 [exp] 329 / 2e-104 AT1G65590 564 / 0.0 beta-hexosaminidase 3 (.1) Lus10007899 [exp] 210 / 7e-60 AT1G05590 746 / 0.0 BETA-HEXOSAMINIDASE 3, beta-hexosaminidase 2 (.1) Lus10030348 [exp] 205 / 5e-58 AT1G05590 748 / 0.0 BETA-HEXOSAMINIDASE 3, beta-hexosaminidase 2 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G211000 [exp] 799 / 0 AT3G55260 815 / 0.0 beta-hexosaminidase 1 (.1) Potri.008G079400 [exp] 513 / 4e-177 AT1G65590 781 / 0.0 beta-hexosaminidase 3 (.1) Potri.001G232800 [exp] 215 / 6e-62 AT1G05590 796 / 0.0 BETA-HEXOSAMINIDASE 3, beta-hexosaminidase 2 (.1) Potri.001G232600 [exp] 211 / 2e-60 AT1G05590 798 / 0.0 BETA-HEXOSAMINIDASE 3, beta-hexosaminidase 2 (.1) Potri.008G049801 [exp] 117 / 4e-31 AT3G55260 108 / 6e-29 beta-hexosaminidase 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0546 [flax] [poplar] Hexosaminidase PF02838 [flax] [poplar] Glyco_hydro_20b Glycosyl hydrolase family 20, domain 2 CL0058 [flax] [poplar] Glyco_hydro_tim PF00728 [flax] [poplar] Glyco_hydro_20 Glycosyl hydrolase family 20, catalytic domain
Representative CDS sequence Show only first row Show all	>Lus10030323 pacid=23153000 polypeptide=Lus10030323 locus=Lus10030323.g ID=Lus10030323.BGIv1.0 annot-version=v1.0 ATGAAGAACAACAACAACAACCCATATCCTCCGATCATCACTTTACTCTTCGCCCTCTTCCCACTCCTCTCTTTTACCTCTGCCGCCGGAGTCAACGCCG GCAGTACCCTCACTTACCTGTGGCCTCTCCCTGCTGAGTTCAATTCCGGCGCCCAGATTATCTCCGTCGACCCTAACCTGGCCCTCGTCGCCGCTGGTAA CGGACGCAAGTCGGCGATCCTCAAGGATTCCTTTGATAGGTACAAGGAGATCATATTCAAGCATGGGAGCAGCGGGACTCGGAGGAGCTCATTGGCTTTG GAGAGATTCGGAGGTCGCAAGGGGAAGCGATCCGACGGTTACGACGTCGCCGGGTTGAAAATCGTGGTGCATTCTGATAGCGAAGTGCTTGAGCTTGGAG TGGATGAGAGCTATACGTTATTTATAGGCAAGAGCGATGGACAGTCTATTATTTGGGAAGCAAATATTGAGGTGAATTGGACTTCTCAGCTTCTTTGTTC ATGCGATGTTGATTTCTCATCACTCGTACAGGCAAATACCGTTTATGGGGCAATGCGCGGTTTAGAGACTTTTAGCCAGCTGTGTATATTTGACTATGAA ACTAAATCGGTAAAAATACACAAGGCTCCATGGTTCATTCGAGATAAACCAAGGTTCAGTTACCGGGGGCTGATGATTGATACATCGAGGCACTTTCTTC CGACTAATGTTATCAAGCAGATCATTGAATCCATGTCCTATGCTAAATTTAATGTCCTACACTGGCACATCATAGACGAGCAGTCATTTCCTTTGGAGGT GCCAACATATCCAAATTTGTGGAAAGGTTCATATTCACAATGGGAGCGCTACACTGTTGAGGACGCATATGAGATTGTTAATTTGAGTCTTGAAATTGAA GGTTTGGATCTAGAGTGCAAGGAATTTGAACTTGTGACAGGGATGGTGCAAACAATTATTTCCACTGCTCGGTTTTTGCACAGCATCAATGTGATGGCAG AAGTAGATGTCCCTGGTCATGCAGAATCATGGGGCGTTGGATATCCTGATCTTTGGCCTTCTTCTACCTGTAGAGAGCCACTGGATGTTACAAAGAATTA TACCTTTGATGTGATATCTGGAATTCTTTCAGTTCTTGGACATAACTTGTCCATTTCAGACATGAGGAAAATTTTCCCTTTCGGGCTCTTCCACTTGGGT GGCGATGAAGTGAACACAGATTGCTGGAGGTCCACTCCTCATGTGAAGAAATGGCTGGCGGAGCGAAACATGACTACAAAAGATGCATATAAGTATTTTG TACTCAAAGCTCAAGAAATAGCAATTTCAAAAGGTTGGACCCCAGTCAACTGGGAAGAAACATTCAACACATTTCCATCAAGTCTCAATCCAAAGACCAT AGTGCATAATTGGTTGGGTGGAGGAGTTTGTCAAAAGGCTGTGGAGAAAGGTTTTAGATGCATTTTTAGCAATCAAGGGTTCTGGTACCTTGACCACTTA GATGTGCCTTGGGAGGAAGTTTATACCGCAGATCCAGTTGAAGGAATATATGACTCCTCGAAGCAGAAGCTTGTTATAGGTGGAGAAGTCTGTATGTGGG GCGAAACTGCTGATACTTCCGTCGTCCAGCAAACAATTTGGCCACGAGCAGCTGCTGCTGCAGAACGATTATGGAGCAAGAAAGAGGACATATCTGGAAA CATAACGGTAACTGCATTGCCGCGGCTGCACTACTTCAGATGCCTATTGAACAGGCGTGGGGTTGCAGCTGCTCCCCTCTCAAATGCATATGCCCGGCAG CCTCCAACTGGCCCAGGGCCATGCTTTGTTTCTGGACCAAGCAAGTAA
AA sequence Show only first row Show all	>Lus10030323 pacid=23153000 polypeptide=Lus10030323 locus=Lus10030323.g ID=Lus10030323.BGIv1.0 annot-version=v1.0 MKNNNNNPYPPIITLLFALFPLLSFTSAAGVNAGSTLTYLWPLPAEFNSGAQIISVDPNLALVAAGNGRKSAILKDSFDRYKEIIFKHGSSGTRRSSLAL ERFGGRKGKRSDGYDVAGLKIVVHSDSEVLELGVDESYTLFIGKSDGQSIIWEANIEVNWTSQLLCSCDVDFSSLVQANTVYGAMRGLETFSQLCIFDYE TKSVKIHKAPWFIRDKPRFSYRGLMIDTSRHFLPTNVIKQIIESMSYAKFNVLHWHIIDEQSFPLEVPTYPNLWKGSYSQWERYTVEDAYEIVNLSLEIE GLDLECKEFELVTGMVQTIISTARFLHSINVMAEVDVPGHAESWGVGYPDLWPSSTCREPLDVTKNYTFDVISGILSVLGHNLSISDMRKIFPFGLFHLG GDEVNTDCWRSTPHVKKWLAERNMTTKDAYKYFVLKAQEIAISKGWTPVNWEETFNTFPSSLNPKTIVHNWLGGGVCQKAVEKGFRCIFSNQGFWYLDHL DVPWEEVYTADPVEGIYDSSKQKLVIGGEVCMWGETADTSVVQQTIWPRAAAAAERLWSKKEDISGNITVTALPRLHYFRCLLNRRGVAAAPLSNAYARQ PPTGPGPCFVSGPSK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G55260		HEXO1, ATHEX2	beta-hexosaminidase 1 (.1)		Lus10030323 [exp]	0	1
AT5G50230			Transducin/WD40 repeat-like su...		Lus10018081 [exp]	4.7	0.8778
AT1G19440		KCS4	3-ketoacyl-CoA synthase 4 (.1)		Lus10042318 [exp]	5.4	0.8912
AT4G31860			Protein phosphatase 2C family ...		Lus10003423 [exp]	8.7	0.8695
AT3G05500			Rubber elongation factor prote...		Lus10020648 [exp]	12.7	0.8773
AT5G08160		ATPK3	serine/threonine protein kinas...		Lus10013493 [exp]	13.6	0.8370
AT4G39660		AGT2	alanine:glyoxylate aminotransf...		Lus10004480 [exp]	18.4	0.8609
AT5G37790			Protein kinase superfamily pro...		Lus10028518 [exp]	21.2	0.8331
AT5G13050		5-FCL	5-formyltetrahydrofolate cyclo...		Lus10004254 [exp]	21.9	0.8564
AT2G43790		ATMAPK6, MAPK6,...	MAP kinase 6 (.1)		Lus10008339 [exp]	24.7	0.8528
AT1G15020		QSO2, ATQSOX1	quiescin-sulfhydryl oxidase 1 ...		Lus10035270 [exp]	26.1	0.7969

Compare expression of checked genes

Lus10030323 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.