Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G55270 657 / 0 MKP1, ATMKP1 ARABIDOPSIS MITOGEN-ACTIVATED PROTEIN KINASE PHOSPHATASE 1, mitogen-activated protein kinase phosphatase 1 (.1) AT3G06110 95 / 3e-22 DSPTP1B, MKP2, ATMKP2 DUAL-SPECIFICITY PROTEIN PHOSPHATASE 1B, ARABIDOPSIS MAPK PHOSPHATASE 2, MAPK phosphatase 2 (.1.2.3) AT3G23610 93 / 2e-21 DSPTP1 dual specificity protein phosphatase 1 (.1.2.3) AT5G23720 78 / 2e-14 PHS1 PROPYZAMIDE-HYPERSENSITIVE 1, dual specificity protein phosphatase family protein (.1.2.3) AT2G04550 68 / 3e-12 DSPTP1E, IBR5 DUAL SPECIFICITY PROTEIN PHOSPHATASE 1E, indole-3-butyric acid response 5 (.1.3) AT3G01510 47 / 4e-05 LSF1 like SEX4 1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10003291 [exp] 1455 / 0 AT3G55270 800 / 0.0 ARABIDOPSIS MITOGEN-ACTIVATED PROTEIN KINASE PHOSPHATASE 1, mitogen-activated protein kinase phosphatase 1 (.1) Lus10006229 [exp] 511 / 2e-170 AT3G23610 512 / 1e-171 dual specificity protein phosphatase 1 (.1.2.3) Lus10036877 [exp] 507 / 9e-169 AT3G23610 511 / 3e-171 dual specificity protein phosphatase 1 (.1.2.3) Lus10021940 [exp] 92 / 2e-21 AT3G23610 248 / 1e-84 dual specificity protein phosphatase 1 (.1.2.3) Lus10034033 [exp] 80 / 2e-17 AT3G23610 168 / 5e-54 dual specificity protein phosphatase 1 (.1.2.3) Lus10041227 [exp] 80 / 1e-16 AT3G23610 237 / 4e-80 dual specificity protein phosphatase 1 (.1.2.3) Lus10032545 [exp] 82 / 9e-16 AT5G23720 1120 / 0.0 PROPYZAMIDE-HYPERSENSITIVE 1, dual specificity protein phosphatase family protein (.1.2.3) Lus10043195 [exp] 81 / 4e-15 AT5G23720 1047 / 0.0 PROPYZAMIDE-HYPERSENSITIVE 1, dual specificity protein phosphatase family protein (.1.2.3) Lus10000921 [exp] 69 / 1e-12 AT2G04550 322 / 1e-111 DUAL SPECIFICITY PROTEIN PHOSPHATASE 1E, indole-3-butyric acid response 5 (.1.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G210900 [exp] 809 / 0 AT3G55270 715 / 0.0 ARABIDOPSIS MITOGEN-ACTIVATED PROTEIN KINASE PHOSPHATASE 1, mitogen-activated protein kinase phosphatase 1 (.1) Potri.008G049900 [exp] 792 / 0 AT3G55270 710 / 0.0 ARABIDOPSIS MITOGEN-ACTIVATED PROTEIN KINASE PHOSPHATASE 1, mitogen-activated protein kinase phosphatase 1 (.1) Potri.010G033000 [exp] 89 / 4e-20 AT3G23610 249 / 4e-85 dual specificity protein phosphatase 1 (.1.2.3) Potri.012G105800 [exp] 82 / 8e-16 AT5G23720 1006 / 0.0 PROPYZAMIDE-HYPERSENSITIVE 1, dual specificity protein phosphatase family protein (.1.2.3) Potri.015G105000 [exp] 81 / 3e-15 AT5G23720 1096 / 0.0 PROPYZAMIDE-HYPERSENSITIVE 1, dual specificity protein phosphatase family protein (.1.2.3) Potri.014G160500 [exp] 65 / 3e-11 AT2G04550 333 / 6e-116 DUAL SPECIFICITY PROTEIN PHOSPHATASE 1E, indole-3-butyric acid response 5 (.1.3) Potri.006G040300 [exp] 59 / 9e-09 AT4G18593 148 / 5e-44 dual specificity protein phosphatase-related (.1) Potri.016G035700 [exp] 58 / 1e-08 AT4G18593 149 / 3e-44 dual specificity protein phosphatase-related (.1) Potri.001G349000 [exp] 46 / 0.0001 AT3G01510 775 / 0.0 like SEX4 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0031 [flax] [poplar] Phosphatase PF00782 [flax] [poplar] DSPc Dual specificity phosphatase, catalytic domain
Representative CDS sequence Show only first row Show all	>Lus10030324 pacid=23153082 polypeptide=Lus10030324 locus=Lus10030324.g ID=Lus10030324.BGIv1.0 annot-version=v1.0 ATGGTGAAGAAAGAGGATGGCCCCAGTAATCCTCTTCCGCCGTGCCAAATTCCTCCTGCTGGCGGGCGCAAAATGTTCTGGCGCTCTGCATCCTGGTCCT CTTCCAGGACAGCGCTTCAAAATCCGGGAATTGAGGAGGACAGTGTCATGGATCCCAATGGAAACAATATTGGCAGTGGGGATCCTGGGCAAAATTGGCA CTATCCTGCTCCCTTTACTCCAAGGTCTCAAAAGAGCAGTAAAGCACGGGCCTGCTTGCCACCTTTGCAACCTTTGTCAATTGCACGAAAGAGTTTGGAT GAGTGGCCTAAAGCAGGTGGCGATGATTTGGGTGTGTGGCCAATGCCATCGACTCCTAGTGGTAGCAAGACTGGTGATAGATTGAAACTGGATTTGTCAT CGATTGAAAGAAGCCAGGATAGAAATTGTGGGTCAGTGAAGAGAGATACAATTGCGGTGTATGATAAAGAATGCTCCAAAGTAGCGGAGCATGTCTATCT TGGTGGAGATGCTGTGGCTAAGGATAAGGAAATTTTGAAGAAGAATGGGATTACCCATGTACTGAATTGTGTTGGGTTTGTTTGTCCGGAGTACTTCAAG GCGGACTTTGTGTATATGACATTGTGGTTGCAGGACAGTCCATCAGAGGATATAACAAGCATTCTGTATGATGTTTTTGATTACTTTGAGGACGTTAGGG GACATTGTGGGAGAGTTTTCGTGCACTGTTGCCAAGGGGTTTCACGGTCCACTTCTTTGGTAATTGCATATCTTATGTGGAGAGAGGGTCAGAGTTTTGA TGATGCATTTCAATACGTTAAGTCAGCAAGAGGTATTGCCGATCCAAATATGGGCTTTGCTTGTCAGTTACTACAGTGCCAAAAGAGGGTTCATGCTTTT CCACTGAGTCCAAGTTCTTTATTGAGAATGTATAGAATGGTCCCTCATTCACCTTATGATCCTTTGCACCTGGTCCCAAGAATGTTGAATGATCCGTTAC CATCTGCTCTTGATTCTAGAGGTGCCTTCATCATTCACATACCCTCCTCAATGTATCTTTGGGTGGGTAAGAATTGTGAACCCATTATGGAAAGAGATGC AAGAGGTGCTGTTGGCCAGATTGTTCGATATGAGAGGGCTCAGGGTCCAATAATAGCTGTCAAAGAAGGAGAAGAGCCGCCCTATTTTTGGGATGCTTTT TCAAATTATTTACCTCTCATGGATAGATCACGCAGGGGATTAGATGCCGAGTCATCTAAGATTTCCCCAGGTGACAGAAGAGTTGATGCGTATAATGTTG ACTATGAGATTTTCAAGAAGGCTATCAAAGGTGGTATTGTGCCTCCTTTTTCTTCATCTGGGAATGTACATGAAACCCGTCTCCCTACTAGAGAAAGTAG CTGGAGTTTGCTGAGGAGAAAGTTTGCTCGGGTTGATATGAAAGAGTTCGTCTCTGCCCCTAGGATATTTCTATCTCGCGTATATTCAGATTCTATGATG ATTGTGCATTCATCATCACCTTCATCCTCTTCATCGGTGTCATCTTCATCTTCTTCACCTCCTTATACCTCTCCAGATTCCATCTCTTCCTCTGATTCCA GCACTAACTCGAAGTTTTCTGAAGCATCTCCTGATTCTCCATCAGTACCTTCATCTTCTCTGCCCGTATCTTCTGCTTTGTCTAACTTTTGTGACTTGAC TCTTTCACCAAGGAAACCTTCAGTTCAACTGTCCCTTAACAGCCACGGGCCTGATGGCCAGGGCATTAGCATTGAATCAAAAATGGGTTCATATGTGATG GCATCACCGTCTAAAAAGTCATCACCTTCACTGGCAGAGCGTAGAGGGGGTTTATCAAAATCTTTGAAGTTGCCGGTGGTAAGTGATGAGGTTGCCAATG TGGCAGCTGGTTCTCATTCAAGTAAAGATGATACCAGGCTGAATACCAATGGCTTTTCTTGGTGTGTTTCAGATAGTGTAGAACTTGTTTTAGTGTCCAA ATATGATGATAATGCAGGTGAGGTTTCAGCTCCATTGTTTAATTCAAGTATAGACAATATAGTTGCCCCAAACTTGTCTAGCAAGGAAGCTACTTTTGTA AATGCTTGTGATGAACATTGTGTAAAGAATCCTGACTGCAGCACCGAGAGTTCCAGGAAGGAAGCTATGTCTGCATCACCTGGCCTAATACAACCTCTTG CATACCGCTGGCCCAGTTTAGAGAGGATTTCACCATTTAGTGCCAATAGTCTGGTCTCTGAGGGGGCTGTTGCAGTACTGATGTCTCCTTCTGGAATAGA TAGAGATGTAAAGAGAATTCTGTACTTCTGGATAGGAAAGTCATTTACTTGTGGCGAGAGCTTGAATCAGTTAGAAGGCAGCCCAGGATTTGCGGATGTA CGAGATATTGACTGGGAAGAGGTTGGTTGTCATTTTGTAACTCATTTGGGTCTTCAAATGGACACTCCTAGTAAGGTGGAGGTAGTCAAGGAAGGAGAAG AACCGGCTGAGTTTCTTGCAATGTTAGAGCAATGA
AA sequence Show only first row Show all	>Lus10030324 pacid=23153082 polypeptide=Lus10030324 locus=Lus10030324.g ID=Lus10030324.BGIv1.0 annot-version=v1.0 MVKKEDGPSNPLPPCQIPPAGGRKMFWRSASWSSSRTALQNPGIEEDSVMDPNGNNIGSGDPGQNWHYPAPFTPRSQKSSKARACLPPLQPLSIARKSLD EWPKAGGDDLGVWPMPSTPSGSKTGDRLKLDLSSIERSQDRNCGSVKRDTIAVYDKECSKVAEHVYLGGDAVAKDKEILKKNGITHVLNCVGFVCPEYFK ADFVYMTLWLQDSPSEDITSILYDVFDYFEDVRGHCGRVFVHCCQGVSRSTSLVIAYLMWREGQSFDDAFQYVKSARGIADPNMGFACQLLQCQKRVHAF PLSPSSLLRMYRMVPHSPYDPLHLVPRMLNDPLPSALDSRGAFIIHIPSSMYLWVGKNCEPIMERDARGAVGQIVRYERAQGPIIAVKEGEEPPYFWDAF SNYLPLMDRSRRGLDAESSKISPGDRRVDAYNVDYEIFKKAIKGGIVPPFSSSGNVHETRLPTRESSWSLLRRKFARVDMKEFVSAPRIFLSRVYSDSMM IVHSSSPSSSSSVSSSSSSPPYTSPDSISSSDSSTNSKFSEASPDSPSVPSSSLPVSSALSNFCDLTLSPRKPSVQLSLNSHGPDGQGISIESKMGSYVM ASPSKKSSPSLAERRGGLSKSLKLPVVSDEVANVAAGSHSSKDDTRLNTNGFSWCVSDSVELVLVSKYDDNAGEVSAPLFNSSIDNIVAPNLSSKEATFV NACDEHCVKNPDCSTESSRKEAMSASPGLIQPLAYRWPSLERISPFSANSLVSEGAVAVLMSPSGIDRDVKRILYFWIGKSFTCGESLNQLEGSPGFADV RDIDWEEVGCHFVTHLGLQMDTPSKVEVVKEGEEPAEFLAMLEQ

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G55270		MKP1, ATMKP1	ARABIDOPSIS MITOGEN-ACTIVATED ...		Lus10030324 [exp]	0	1
AT1G63700		EMB71, MAPKKK4,...	YODA, MAP KINASE KINASE KINASE...		Lus10032279 [exp]	3.5	0.7899
AT2G13370		CHR5	chromatin remodeling 5 (.1)		Lus10022423 [exp]	5.7	0.7946
AT1G70060		SNL4	SIN3-like 4 (.1)		Lus10030817 [exp]	8.5	0.7920
AT1G08720		EDR1, ATEDR1	ENHANCED DISEASE RESISTANCE 1,...		Lus10004124 [exp]	11.2	0.7336
AT5G23150		HUA2	ENHANCER OF AG-4 2, Tudor/PWWP...		Lus10010197 [exp]	11.7	0.7930
AT3G48195			Phox (PX) domain-containing pr...		Lus10042108 [exp]	12.0	0.7900
AT1G54710		ATATG18H	homolog of yeast autophagy 18 ...		Lus10018960 [exp]	13.8	0.7627
AT3G06670			binding (.1.2)		Lus10037742 [exp]	19.6	0.7898
AT3G17205		UPL6	ubiquitin protein ligase 6 (.1...		Lus10037820 [exp]	22.3	0.7715
AT3G51620			PAP/OAS1 substrate-binding dom...		Lus10025239 [exp]	25.0	0.7482

Compare expression of checked genes

Lus10030324 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.