Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G55330 268 / 1e-90 PPL1 PsbP-like protein 1 (.1) AT2G39470 137 / 2e-39 PnsL1, PPL2 Photosynthetic NDH subcomplex L 1, PsbP-like protein 2 (.1.2.3) AT3G05410 64 / 1e-11 Photosystem II reaction center PsbP family protein (.1.2) AT5G11450 58 / 1e-09 PPD5 PsbP domain protein 5, Mog1/PsbP/DUF1795-like photosystem II reaction center PsbP family protein (.1) AT4G15510 57 / 2e-09 Photosystem II reaction center PsbP family protein (.1.2.3) AT1G06680 54 / 2e-08 PSII-P, OEE2, PSBP-1, OE23 OXYGEN-EVOLVING ENHANCER PROTEIN 2, OXYGEN EVOLVING COMPLEX SUBUNIT 23 KDA, photosystem II subunit P-1 (.1.2) AT1G77090 41 / 0.0005 Mog1/PsbP/DUF1795-like photosystem II reaction center PsbP family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10003289 [exp] 450 / 4e-162 AT3G55330 267 / 7e-91 PsbP-like protein 1 (.1) Lus10023436 [exp] 158 / 2e-47 AT2G39470 255 / 3e-86 Photosynthetic NDH subcomplex L 1, PsbP-like protein 2 (.1.2.3) Lus10040314 [exp] 157 / 3e-47 AT2G39470 254 / 5e-86 Photosynthetic NDH subcomplex L 1, PsbP-like protein 2 (.1.2.3) Lus10000352 [exp] 59 / 4e-10 AT4G15510 309 / 4e-106 Photosystem II reaction center PsbP family protein (.1.2.3) Lus10000614 [exp] 55 / 1e-08 AT4G15510 308 / 9e-106 Photosystem II reaction center PsbP family protein (.1.2.3) Lus10029903 [exp] 54 / 2e-08 AT3G05410 286 / 2e-97 Photosystem II reaction center PsbP family protein (.1.2) Lus10022110 [exp] 52 / 2e-07 AT5G11450 340 / 2e-117 PsbP domain protein 5, Mog1/PsbP/DUF1795-like photosystem II reaction center PsbP family protein (.1) Lus10001861 [exp] 52 / 2e-07 AT5G11450 342 / 7e-117 PsbP domain protein 5, Mog1/PsbP/DUF1795-like photosystem II reaction center PsbP family protein (.1) Lus10020717 [exp] 48 / 2e-06 AT1G06680 380 / 2e-134 OXYGEN-EVOLVING ENHANCER PROTEIN 2, OXYGEN EVOLVING COMPLEX SUBUNIT 23 KDA, photosystem II subunit P-1 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G210200 [exp] 325 / 4e-113 AT3G55330 299 / 2e-103 PsbP-like protein 1 (.1) Potri.008G050300 [exp] 193 / 1e-61 AT3G55330 164 / 8e-51 PsbP-like protein 1 (.1) Potri.010G210000 [exp] 149 / 5e-44 AT2G39470 278 / 3e-95 Photosynthetic NDH subcomplex L 1, PsbP-like protein 2 (.1.2.3) Potri.005G010700 [exp] 62 / 3e-11 AT4G15510 319 / 4e-110 Photosystem II reaction center PsbP family protein (.1.2.3) Potri.013G006500 [exp] 62 / 4e-11 AT4G15510 306 / 5e-105 Photosystem II reaction center PsbP family protein (.1.2.3) Potri.005G206700 [exp] 47 / 5e-06 AT1G06680 400 / 2e-142 OXYGEN-EVOLVING ENHANCER PROTEIN 2, OXYGEN EVOLVING COMPLEX SUBUNIT 23 KDA, photosystem II subunit P-1 (.1.2) Potri.009G062500 [exp] 47 / 5e-06 AT3G63540 240 / 1e-81 Mog1/PsbP/DUF1795-like photosystem II reaction center PsbP family protein (.1) Potri.002G055700 [exp] 44 / 7e-05 AT1G06680 382 / 3e-135 OXYGEN-EVOLVING ENHANCER PROTEIN 2, OXYGEN EVOLVING COMPLEX SUBUNIT 23 KDA, photosystem II subunit P-1 (.1.2) Potri.002G072400 [exp] 42 / 0.0003 AT1G77090 345 / 2e-120 Mog1/PsbP/DUF1795-like photosystem II reaction center PsbP family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0619 [flax] [poplar] Mog1p_PsbP PF01789 [flax] [poplar] PsbP PsbP
Representative CDS sequence Show only first row Show all	>Lus10030326 pacid=23153139 polypeptide=Lus10030326 locus=Lus10030326.g ID=Lus10030326.BGIv1.0 annot-version=v1.0 ATGGCTTCCCTCCAAAACTCACCTTCCCTCTATCGCACATTGTCTTTCTTCCCCCACCAGCAGCAGGTTGGAGGATTACAGAAGCAGCAGCAAACAACGA TTCCCAACTGTGGGAAAGGAATTTCGTTTCTTATTCGAGCCCAGCAACCATCTCTTAGAGGATTACAGAAGCAGCAGCAAACAACGATTCCCAACTGTGG GAAAGGAATTTCGTTTCTTATTCGAGCCCAGCAACCATCTCTTAGTGAGTTCTCTATTTCAATCCCTTTGGGTAGACGCCAATTGGTGGGTGTTGGGATC ATTGCTCCTCTAGTTTCTCTGGTGGAACAGACTTCCACTTCATTTGCTGCAGAAAACAAGAAAGGGTTCCTCTCTGTAACCGACCAGAAGGATGGATACT CATTCGCTTACCCCTTTGGTTGGCAAGAAGTGGAGATTCAAGGACAAGATAAAGTGTTCAAAGATGTGATTGAGCCACTAGAAAGTGTCAGTGTAACCAT GTTCCCGACTAGCAAGCTAGATATTCGAGATTTTGGCCCGCCGGACCAGGTTGCAGGAACTCTGATAAAAAAGGTTCTGGCTTCTCCTACGCAGAAGACA AAGCTCATCCAGGCTAAAGAGCAAGATGTAGAAGGAAGAGCTTACTACACATTTGAGTTCGTTGCTCAGGCTCCCAACTTCACCCGTCACGCTCTCAGCG CAATTGTTATCGGCAATGGAAAGCTATACACCTTGACAACTGGAGCGAAAGAAAGAAGATGGGAGAAGATGAAGGATAAATTGCAGACGATCGTGGACTC CTTCAAAGTTGTCAATGTCTGA
AA sequence Show only first row Show all	>Lus10030326 pacid=23153139 polypeptide=Lus10030326 locus=Lus10030326.g ID=Lus10030326.BGIv1.0 annot-version=v1.0 MASLQNSPSLYRTLSFFPHQQQVGGLQKQQQTTIPNCGKGISFLIRAQQPSLRGLQKQQQTTIPNCGKGISFLIRAQQPSLSEFSISIPLGRRQLVGVGI IAPLVSLVEQTSTSFAAENKKGFLSVTDQKDGYSFAYPFGWQEVEIQGQDKVFKDVIEPLESVSVTMFPTSKLDIRDFGPPDQVAGTLIKKVLASPTQKT KLIQAKEQDVEGRAYYTFEFVAQAPNFTRHALSAIVIGNGKLYTLTTGAKERRWEKMKDKLQTIVDSFKVVNV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G55330		PPL1	PsbP-like protein 1 (.1)		Lus10030326 [exp]	0	1
AT3G18890		AtTic62	translocon at the inner envelo...		Lus10042346 [exp]	1.0	0.9702
AT3G26710		CCB1	cofactor assembly of complex C...		Lus10031981 [exp]	1.7	0.9514
AT1G32550		FdC1	ferredoxin C 1, 2Fe-2S ferredo...		Lus10004576 [exp]	2.0	0.9620
AT3G53460		CP29	chloroplast RNA-binding protei...		Lus10023191 [exp]	2.8	0.9450
AT3G55330		PPL1	PsbP-like protein 1 (.1)		Lus10003289 [exp]	3.0	0.9335
AT4G02790		EMB3129	EMBRYO DEFECTIVE 3129, GTP-bin...		Lus10014672 [exp]	4.5	0.9368
AT1G76730			NagB/RpiA/CoA transferase-like...		Lus10028565 [exp]	5.6	0.9088
AT1G20810			FKBP-like peptidyl-prolyl cis-...		Lus10016037 [exp]	6.6	0.9294
AT2G01755			unknown protein		Lus10005230 [exp]	7.3	0.9354
AT1G54780		AtTLP18.3, TLP1...	thylakoid lumen protein 18.3, ...		Lus10029979 [exp]	9.2	0.9352

Compare expression of checked genes

Lus10030326 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.