Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G55340 274 / 5e-84 PHIP1 phragmoplastin interacting protein 1 (.1) AT5G50250 76 / 6e-15 CP31B chloroplast RNA-binding protein 31B (.1) AT2G35410 74 / 5e-14 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) AT4G24770 73 / 1e-13 CP31, ATRBP33, ATRBP31, RBP31 ARABIDOPSIS THALIANA RNA BINDING PROTEIN, APPROXIMATELY 31 KD, 31-kDa RNA binding protein (.1) AT1G60000 67 / 3e-12 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) AT5G19350 68 / 7e-12 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) AT3G52380 67 / 7e-12 CP33, PDE322 PIGMENT DEFECTIVE 322, chloroplast RNA-binding protein 33 (.1) AT2G16940 64 / 1e-10 Splicing factor, CC1-like (.1.2.3) AT3G08000 59 / 3e-10 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) AT3G18610 63 / 4e-10 ATNUC-L2, PARLL1, ATRANGAP1 PARALLEL1-LIKE 1, nucleolin like 2 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10003287 [exp] 863 / 0 AT3G55340 291 / 6e-91 phragmoplastin interacting protein 1 (.1) Lus10017026 [exp] 88 / 2e-18 AT3G52660 320 / 2e-105 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Lus10017403 [exp] 81 / 1e-15 AT3G18610 216 / 5e-59 PARALLEL1-LIKE 1, nucleolin like 2 (.1) Lus10010202 [exp] 79 / 6e-15 AT3G18610 218 / 9e-60 PARALLEL1-LIKE 1, nucleolin like 2 (.1) Lus10030194 [exp] 73 / 3e-14 AT1G01080 207 / 2e-66 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Lus10029372 [exp] 71 / 6e-13 AT3G52380 269 / 6e-89 PIGMENT DEFECTIVE 322, chloroplast RNA-binding protein 33 (.1) Lus10002222 [exp] 69 / 1e-12 AT3G53460 263 / 1e-87 chloroplast RNA-binding protein 29 (.1.2.3.4) Lus10031844 [exp] 69 / 3e-12 AT5G19350 556 / 0.0 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Lus10023191 [exp] 68 / 3e-12 AT3G53460 263 / 2e-87 chloroplast RNA-binding protein 29 (.1.2.3.4)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G209701 [exp] 367 / 4e-122 AT3G55340 265 / 2e-82 phragmoplastin interacting protein 1 (.1) Potri.012G090200 [exp] 81 / 2e-16 AT4G24770 310 / 7e-105 ARABIDOPSIS THALIANA RNA BINDING PROTEIN, APPROXIMATELY 31 KD, 31-kDa RNA binding protein (.1) Potri.001G340800 [exp] 77 / 3e-15 AT4G24770 322 / 2e-110 ARABIDOPSIS THALIANA RNA BINDING PROTEIN, APPROXIMATELY 31 KD, 31-kDa RNA binding protein (.1) Potri.001G141300 [exp] 76 / 6e-15 AT2G35410 248 / 2e-81 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Potri.015G086500 [exp] 75 / 1e-14 AT4G24770 290 / 6e-97 ARABIDOPSIS THALIANA RNA BINDING PROTEIN, APPROXIMATELY 31 KD, 31-kDa RNA binding protein (.1) Potri.009G065900 [exp] 70 / 4e-13 AT3G52150 237 / 2e-78 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Potri.009G137200 [exp] 70 / 2e-12 AT2G16940 535 / 0.0 Splicing factor, CC1-like (.1.2.3) Potri.014G105800 [exp] 68 / 2e-12 AT1G01080 271 / 7e-91 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Potri.016G068300 [exp] 68 / 3e-12 AT3G52380 264 / 5e-87 PIGMENT DEFECTIVE 322, chloroplast RNA-binding protein 33 (.1) Potri.008G172100 [exp] 66 / 1e-11 AT1G60000 288 / 5e-98 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0511 [flax] [poplar] Retroviral_zf PF00098 [flax] [poplar] zf-CCHC Zinc knuckle CL0221 [flax] [poplar] RRM PF00076 [flax] [poplar] RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
Representative CDS sequence Show only first row Show all	>Lus10030327 pacid=23153063 polypeptide=Lus10030327 locus=Lus10030327.g ID=Lus10030327.BGIv1.0 annot-version=v1.0 ATGGTGTTATCAAACAAGAAGCTCAAGCAGAAGCTCAGGGAAGTCAAATCAGAATCTATAGCTTCATCAATATCCGGCGAAGTGGTATCCCAATCGAACG GGAAACCAGATACGCTTTTGGAGCTTCAAGAGCGACTGGATGCAGTAAAACAGAAGACGCGGCTCGTGAAGAAGGACAAGAGATTAAGTTCGCGAGGGCT AGAGAATGAAGAAAAGGGTTCCGTCAATGGGAATAACGAACGAAATGAGAACAATGATAAGGAGAGTCTGGATGGGAAGAAGAGGAAGAGGGAGGAGGAG CAGAGCACCGATAAGGTGGAAAAGAAGGCTAAGATGACAAAGAAGAAAAAGAAGAAGAAGAGCAAAGTTAAGAAGAAGAAGAGCAAGGAAAATGCAAATG GCGAGGTTGACAATGAGAAAATGGTAATTGATGGTGTTTCGAGCAAAAAAGAAATGCCAGTAAATGTTGAAAGCTTGGTGATTAAGGACATTGCTAGAAA AGTTTATGTTGGCGGGATTCCGTACTACTCAACCGAAGATGACATTAGGAGTTTCTTTGATAGCTGTGGCACCATTACAGAAGTTGACTCTATGAAGTTT CCTGATAGTGGAAAGTTCAGAGGAATCGCCATCATCAACTTCAAGACTGACGCTGCGGCTAAGAGGGCCTTGGACCTTGATGGAGCTGACATGGGTGGAT TTTTTCTGAAGGTCAAGCCTTATAGTTATAAGACAACTCAACAAACTAAAGTCCCTGATTTTGTTCCCCAAGTTGTAAAGGGTTACAACCGAATCTACGT TGGGAACTTGTCATGGGATATAACAGAAGAAAACATCAGGAACTTTTTCGCAGATTGTAAGATATCATCAATCCGTTTTGGTATGGACAAAGAAACAGGA GAGTTCCGAGGTTACGGGCATGTAGACTTTAGTGATGATGTCTCAATGATGATGGCACTGAAGATGGATCAGCAGATTGTGTGTGGGAGACCAATCAAGA TCAGTTGTGCAGTTCCTAAGAAAGCAGGAGATGCCCATACCATCCCTGGAACAACATTCAAGGAAGCAAGTAAGCCTGAGGTTGTTGATTCTACTCCCAT CACCATACCTATAACTAACGATGACAAGATCTCCACAATTTCCAAGGCCGAAGTTGTAAGAAATGAAGCCAGTAGTATTGAAGCACCGGTTCCGGTTAGT GGTAAGATAAAGAGGAGAACCTGCTATGAATGTGGAGAGAAGGGTCATCTCTCATCAGCCTGCCCGAATAAGCAAAATACAGATGTTACAAATCCCATTA TGGATAATGTCTCAATGATGTCACAGAAGATGGATCAGCAAGCAGATGCTCGTACCATGGCTTGCCTGAGAACAACATTTGAGGAAGCAAGTAAGCCTGA GGTTGATTCAACTCCTCTGATTAACAAAGCCTGCCGTTATGATGAGATCCCCACAATGTCTATTGCCGAAGTTGTAAGAATTGAAGCCAGTAGTATTGAA ACACCGGTTCCATCTAGTGGTAAGATAAAGAGGAGGACCTGCTATGAATGTGGAGAGAAGGGTCATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNATGCTCGTACCATGGCTTTCCTGAGAACAACATTTGA
AA sequence Show only first row Show all	>Lus10030327 pacid=23153063 polypeptide=Lus10030327 locus=Lus10030327.g ID=Lus10030327.BGIv1.0 annot-version=v1.0 MVLSNKKLKQKLREVKSESIASSISGEVVSQSNGKPDTLLELQERLDAVKQKTRLVKKDKRLSSRGLENEEKGSVNGNNERNENNDKESLDGKKRKREEE QSTDKVEKKAKMTKKKKKKKSKVKKKKSKENANGEVDNEKMVIDGVSSKKEMPVNVESLVIKDIARKVYVGGIPYYSTEDDIRSFFDSCGTITEVDSMKF PDSGKFRGIAIINFKTDAAAKRALDLDGADMGGFFLKVKPYSYKTTQQTKVPDFVPQVVKGYNRIYVGNLSWDITEENIRNFFADCKISSIRFGMDKETG EFRGYGHVDFSDDVSMMMALKMDQQIVCGRPIKISCAVPKKAGDAHTIPGTTFKEASKPEVVDSTPITIPITNDDKISTISKAEVVRNEASSIEAPVPVS GKIKRRTCYECGEKGHLSSACPNKQNTDVTNPIMDNVSMMSQKMDQQADARTMACLRTTFEEASKPEVDSTPLINKACRYDEIPTMSIAEVVRIEASSIE TPVPSSGKIKRRTCYECGEKGHXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCSYHGFPENNI

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G55340		PHIP1	phragmoplastin interacting pro...		Lus10030327 [exp]	0	1
AT3G22670			Pentatricopeptide repeat (PPR)...		Lus10041193 [exp]	6.0	0.9153
AT3G16610			pentatricopeptide (PPR) repeat...		Lus10035788 [exp]	8.8	0.8859
AT3G49240		EMB1796	embryo defective 1796, Pentatr...		Lus10018109 [exp]	9.8	0.9122
AT1G74050			Ribosomal protein L6 family pr...		Lus10039084 [exp]	10.5	0.9268
AT2G47990		SWA1, EDA13, ED...	SLOW WALKER1, EMBRYO SAC DEVEL...		Lus10015340 [exp]	11.5	0.9182
AT5G44500			Small nuclear ribonucleoprotei...		Lus10003498 [exp]	13.6	0.9240
AT4G24670		TAR2	tryptophan aminotransferase re...		Lus10039944 [exp]	14.7	0.8881
AT3G05980			unknown protein		Lus10002455 [exp]	15.4	0.8706
AT3G18790			unknown protein		Lus10023225 [exp]	17.7	0.8854
AT5G06550			unknown protein		Lus10029343 [exp]	18.3	0.9139

Compare expression of checked genes

Lus10030327 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.