Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G46110 121 / 1e-32 Domain of unknown function (DUF966) (.1), Domain of unknown function (DUF966) (.2) AT5G59790 122 / 2e-32 Domain of unknown function (DUF966) (.1) AT2G28150 115 / 3e-29 Domain of unknown function (DUF966) (.1) AT5G10150 101 / 2e-24 Domain of unknown function (DUF966) (.1) AT1G05577 87 / 2e-19 Domain of unknown function (DUF966) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10003286 [exp] 425 / 1e-151 AT5G59790 127 / 2e-33 Domain of unknown function (DUF966) (.1) Lus10004943 [exp] 138 / 5e-38 AT5G59790 303 / 4e-99 Domain of unknown function (DUF966) (.1) Lus10005442 [exp] 135 / 5e-37 AT5G59790 294 / 4e-96 Domain of unknown function (DUF966) (.1) Lus10040860 [exp] 129 / 1e-34 AT5G59790 301 / 1e-98 Domain of unknown function (DUF966) (.1) Lus10005887 [exp] 126 / 3e-33 AT5G59790 293 / 5e-95 Domain of unknown function (DUF966) (.1) Lus10021417 [exp] 122 / 1e-31 AT2G28150 452 / 4e-155 Domain of unknown function (DUF966) (.1) Lus10016150 [exp] 122 / 1e-31 AT2G28150 451 / 2e-154 Domain of unknown function (DUF966) (.1) Lus10037468 [exp] 77 / 5e-16 AT1G05577 166 / 4e-47 Domain of unknown function (DUF966) (.1) Lus10003921 [exp] 73 / 1e-14 AT1G05577 159 / 2e-45 Domain of unknown function (DUF966) (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G209600 [exp] 120 / 3e-33 AT5G59790 161 / 2e-47 Domain of unknown function (DUF966) (.1) Potri.009G027500 [exp] 122 / 3e-32 AT5G59790 333 / 6e-111 Domain of unknown function (DUF966) (.1) Potri.004G216200 [exp] 122 / 2e-31 AT2G28150 501 / 2e-173 Domain of unknown function (DUF966) (.1) Potri.009G005800 [exp] 120 / 4e-31 AT2G28150 531 / 0.0 Domain of unknown function (DUF966) (.1) Potri.008G051000 [exp] 116 / 7e-31 AT5G59790 188 / 1e-56 Domain of unknown function (DUF966) (.1) Potri.001G235700 [exp] 118 / 1e-30 AT5G59790 343 / 6e-115 Domain of unknown function (DUF966) (.1) Potri.005G078300 [exp] 99 / 2e-23 AT5G10150 272 / 1e-87 Domain of unknown function (DUF966) (.1) Potri.009G024900 [exp] 80 / 8e-17 AT1G05577 233 / 2e-72 Domain of unknown function (DUF966) (.1) Potri.001G232300 [exp] 78 / 3e-16 AT1G05577 231 / 4e-72 Domain of unknown function (DUF966) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF06136 [flax] [poplar] DUF966 Domain of unknown function (DUF966)
Representative CDS sequence Show only first row Show all	>Lus10030328 pacid=23153101 polypeptide=Lus10030328 locus=Lus10030328.g ID=Lus10030328.BGIv1.0 annot-version=v1.0 ATGAACATCAGGACCGACCTCAAGATCGTAACCAAGAGGAAAGCAGCGGTTGTTTATCACATCTCGCGTAACGGTCATCTCGAGCATCCTCATTTCTTGG AGGTCCCTATCTCTACTTCTAAAGGCCTCTATCTCAGAGATGTGATCAGTGCTCTAAACTCCATCAGAGGTCCAGGCATAGCTAACTTATACTCTTGGTC AGCAAAGAGGAGCCATGGGAAAGGATTCGTATGGAAGGACTTATCAGAGAAGGACTTGATACAACCTTACCATGATGATGATGTTGATGAACAATACATT CTGAAAGGATCACCAGTCCCTGAACTCTCTCCATGGAACTTGATGAGATCCCCTGATGATACTCTAACATCTTCCACATCCAAACATACCTCAGGATCCT CCGGTAGATTGACAGACGAATTCGATTCCCCGGTCATCAGAAGGAAAAGCTTCCGACGGAGTACATTATTTAAGGATGTCGATGATGCTGAAACTGATAA CGAGAAGCCACACAAGACCAATACCACCGAGATTAAGGAACTAGACTCTGGTTTTTCAACACCAAGAAATAATGGTATTGCCAAGAAAGTGGATGCTGGT AAAGAAGGTCAGCATTATCAAGAAACACTGCGTTCTGCAATGTTTAGAACTGACAGGATATCTTCTCCCTCAACCACACCTCCCAAACCAATAGCAAGGA AAGCAGCAGTGAGAGTTGGGAGAGCTAGGACTTCTGGGCTTCTCATAACTTTGGTCACCTGTGGATCAAAATCCATAAGGTGA
AA sequence Show only first row Show all	>Lus10030328 pacid=23153101 polypeptide=Lus10030328 locus=Lus10030328.g ID=Lus10030328.BGIv1.0 annot-version=v1.0 MNIRTDLKIVTKRKAAVVYHISRNGHLEHPHFLEVPISTSKGLYLRDVISALNSIRGPGIANLYSWSAKRSHGKGFVWKDLSEKDLIQPYHDDDVDEQYI LKGSPVPELSPWNLMRSPDDTLTSSTSKHTSGSSGRLTDEFDSPVIRRKSFRRSTLFKDVDDAETDNEKPHKTNTTEIKELDSGFSTPRNNGIAKKVDAG KEGQHYQETLRSAMFRTDRISSPSTTPPKPIARKAAVRVGRARTSGLLITLVTCGSKSIR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G59790			Domain of unknown function (DU...		Lus10030328 [exp]	0	1
AT1G56580		SVB	SMALLER WITH VARIABLE BRANCHES...		Lus10033613 [exp]	4.1	0.6667
AT5G35390			Leucine-rich repeat protein ki...		Lus10017144 [exp]	7.7	0.6537
					Lus10003693 [exp]	8.2	0.6561
AT5G16610			unknown protein		Lus10031615 [exp]	12.1	0.6242
AT4G23470			PLAC8 family protein (.1.2.3)		Lus10005117 [exp]	16.3	0.6310
AT1G35710			Protein kinase family protein ...		Lus10002293 [exp]	20.4	0.6188
AT3G03470		CYP89A9	"cytochrome P450, family 87, s...		Lus10020354 [exp]	31.7	0.5159
AT4G37340		CYP81D3	"cytochrome P450, family 81, s...		Lus10024973 [exp]	32.2	0.6400
AT5G65750			2-oxoglutarate dehydrogenase, ...		Lus10029463 [exp]	33.8	0.5855
AT1G13810			Restriction endonuclease, type...		Lus10033589 [exp]	40.2	0.6280

Compare expression of checked genes

Lus10030328 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.