Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G37430 117 / 3e-33 C2H2ZnF ZAT11 C2H2 and C2HC zinc fingers superfamily protein (.1) AT5G04390 108 / 4e-28 C2H2ZnF C2H2-type zinc finger family protein (.1) AT5G59820 103 / 8e-28 C2H2ZnF ZAT12, RHL41 RESPONSIVE TO HIGH LIGHT 41, C2H2-type zinc finger family protein (.1) AT2G28710 102 / 1e-27 C2H2ZnF C2H2-type zinc finger family protein (.1) AT3G53600 102 / 3e-27 C2H2ZnF C2H2-type zinc finger family protein (.1) AT5G03510 103 / 1e-26 C2H2ZnF C2H2-type zinc finger family protein (.1) AT2G28200 101 / 5e-26 C2H2ZnF C2H2-type zinc finger family protein (.1) AT3G46080 92 / 3e-23 C2H2ZnF C2H2-type zinc finger family protein (.1) AT3G46090 91 / 4e-23 C2H2ZnF ZAT7 C2H2 and C2HC zinc fingers superfamily protein (.1) AT3G10470 93 / 4e-22 C2H2ZnF C2H2-type zinc finger family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10023433 [exp] 162 / 1e-50 AT2G28710 117 / 1e-33 C2H2-type zinc finger family protein (.1) Lus10040312 [exp] 153 / 5e-47 AT2G37430 112 / 8e-32 C2H2 and C2HC zinc fingers superfamily protein (.1) Lus10024428 [exp] 128 / 3e-37 AT2G37430 157 / 4e-49 C2H2 and C2HC zinc fingers superfamily protein (.1) Lus10021409 [exp] 103 / 4e-27 AT3G10470 157 / 4e-46 C2H2-type zinc finger family protein (.1) Lus10023912 [exp] 100 / 2e-25 AT5G03510 160 / 1e-47 C2H2-type zinc finger family protein (.1) Lus10040425 [exp] 94 / 7e-24 AT5G04390 159 / 5e-48 C2H2-type zinc finger family protein (.1) Lus10023540 [exp] 92 / 2e-22 AT5G04390 179 / 3e-54 C2H2-type zinc finger family protein (.1) Lus10022610 [exp] 90 / 6e-22 AT2G28200 147 / 1e-43 C2H2-type zinc finger family protein (.1) Lus10021509 [exp] 74 / 3e-16 AT5G03510 103 / 3e-27 C2H2-type zinc finger family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G209400 [exp] 183 / 6e-59 AT2G28710 129 / 2e-38 C2H2-type zinc finger family protein (.1) Potri.008G051200 [exp] 175 / 9e-56 AT2G28710 130 / 8e-39 C2H2-type zinc finger family protein (.1) Potri.009G027700 [exp] 140 / 4e-42 AT5G59820 126 / 5e-37 RESPONSIVE TO HIGH LIGHT 41, C2H2-type zinc finger family protein (.1) Potri.001G235800 [exp] 123 / 3e-35 AT2G37430 133 / 2e-39 C2H2 and C2HC zinc fingers superfamily protein (.1) Potri.004G216900 [exp] 107 / 8e-28 AT2G28200 172 / 4e-52 C2H2-type zinc finger family protein (.1) Potri.006G121600 [exp] 103 / 6e-27 AT5G04390 136 / 4e-38 C2H2-type zinc finger family protein (.1) Potri.009G004800 [exp] 101 / 9e-26 AT2G28200 182 / 7e-56 C2H2-type zinc finger family protein (.1) Potri.010G229400 [exp] 99 / 7e-25 AT5G04390 185 / 3e-56 C2H2-type zinc finger family protein (.1) Potri.016G098100 [exp] 95 / 2e-23 AT2G28200 182 / 6e-56 C2H2-type zinc finger family protein (.1) Potri.008G032300 [exp] 92 / 3e-22 AT5G04390 207 / 1e-64 C2H2-type zinc finger family protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10030330 pacid=23153137 polypeptide=Lus10030330 locus=Lus10030330.g ID=Lus10030330.BGIv1.0 annot-version=v1.0 ATGAACAACAGATCATCATCATCAATAAGCCTCACAATTCCACAAGCAGCAGGAGAAATTAACTTAACCATGGCCAACTGCCTCATGCTTCTCTCACAGC AACCCAATTCAAGCCATCATACGGCGTCGTCCTTGTTCCTGCCCACATACGACGTTAACGTCAACGTCGACGACAGATCCTCTCCTACCAGAGTTTTCGA GTGCAAGACCTGCAACCGGCAGTTCCCTTCCTTCCAGGCACTCGGTGGCCACCGTGCCAGCCACAAGAAGCCCCGACTCACACTCAATGGATCGTCCGGA GAGATGATTATGACGTCACCAGCCAAGCCCAAGACCCACGAGTGTTCTATATGTGGGCTTGAGTTTGCCATAGGCCAAGCCCTCGGAGGCCACATGCGGA GGCATAGAGCTTCTCGTGTTGTGGCCCCCACCAACACATCGGAGGAGGACGAGAGTTCTCCCTCCACCACCACCACGGATGAGGAGAAGGAGGAGGAGGC GCCACCGACGAAGAAAGCTAGGGTGTTGATGAGCCTGGATTTGAACTTGACGCCGTTTGAGAATGACGTCAAGATGTTTAAGCTTGGCAAGGCTGCTCCG TTGGTCCACTGTTTTTATTGA
AA sequence Show only first row Show all	>Lus10030330 pacid=23153137 polypeptide=Lus10030330 locus=Lus10030330.g ID=Lus10030330.BGIv1.0 annot-version=v1.0 MNNRSSSSISLTIPQAAGEINLTMANCLMLLSQQPNSSHHTASSLFLPTYDVNVNVDDRSSPTRVFECKTCNRQFPSFQALGGHRASHKKPRLTLNGSSG EMIMTSPAKPKTHECSICGLEFAIGQALGGHMRRHRASRVVAPTNTSEEDESSPSTTTTDEEKEEEAPPTKKARVLMSLDLNLTPFENDVKMFKLGKAAP LVHCFY

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G37430	C2H2ZnF	ZAT11	C2H2 and C2HC zinc fingers sup...		Lus10030330 [exp]	0	1
AT5G05340			Peroxidase superfamily protein...		Lus10025255 [exp]	3.3	0.9366
AT1G08080		ATACA7, ACA7	A. THALIANA ALPHA CARBONIC ANH...		Lus10016104 [exp]	4.5	0.8976
AT5G37450			Leucine-rich repeat protein ki...		Lus10002278 [exp]	4.9	0.9091
					Lus10029831 [exp]	6.6	0.8630
AT3G57270		BG1	"beta-1,3-glucanase 1", beta-1...		Lus10014108 [exp]	6.9	0.9088
AT1G32100		ATPRR1	pinoresinol reductase 1 (.1)		Lus10012145 [exp]	9.2	0.8641
AT1G31260		ZIP10	zinc transporter 10 precursor ...		Lus10040615 [exp]	10.7	0.8672
AT4G12300		CYP706A4	"cytochrome P450, family 706, ...		Lus10032026 [exp]	13.3	0.9080
AT3G09270		ATGSTU8	glutathione S-transferase TAU ...		Lus10017208 [exp]	17.3	0.9004
AT4G13180			NAD(P)-binding Rossmann-fold s...		Lus10010673 [exp]	21.1	0.9012

Compare expression of checked genes

Lus10030330 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.