Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	No hit found
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Poplar homologues Show only best Show top 10	No hit found
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10030331 pacid=23153014 polypeptide=Lus10030331 locus=Lus10030331.g ID=Lus10030331.BGIv1.0 annot-version=v1.0 ATGAGTTCACAAGCAAAGCAGGAGACTCAGGCGGAGAAGTCACACGGTGGTACTGCGTCGGCGGAAACGAAGGTGAACTCAGTGGATTACAGGTCGTCGG CAGGGCAAGGGCAAGGGCAAGGACAAAGACAAGAGATGAAGAAGGTAGAGGTGATTCACCAAACTGCTCCTCCTTCTCAACCAAAGTCCAAAACAAGTGG TGGAGTTTTGGCCTCCGCTGCAGCTTCAGTGGCAACCACACTCGAATCTGCCAAAGAAGCCATCTCTGGAACATCTTCTTCAACATCAACTTCATCTGAC CGTTCCACTTAA
AA sequence Show only first row Show all	>Lus10030331 pacid=23153014 polypeptide=Lus10030331 locus=Lus10030331.g ID=Lus10030331.BGIv1.0 annot-version=v1.0 MSSQAKQETQAEKSHGGTASAETKVNSVDYRSSAGQGQGQGQRQEMKKVEVIHQTAPPSQPKSKTSGGVLASAAASVATTLESAKEAISGTSSSTSTSSD RST

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
					Lus10030331 [exp]	0	1
AT1G02335		GL22	germin-like protein subfamily ...		Lus10004856 [exp]	3.5	0.9864
					Lus10003370 [exp]	4.0	0.8994
					Lus10017802 [exp]	4.2	0.8797
AT2G43870			Pectin lyase-like superfamily ...		Lus10011417 [exp]	4.9	0.9864
AT3G53710		AGD6	ARF-GAP domain 6 (.1.2)		Lus10012991 [exp]	6.0	0.9864
					Lus10039432 [exp]	6.9	0.9864
					Lus10002332 [exp]	7.7	0.9864
AT3G05950			RmlC-like cupins superfamily p...		Lus10023351 [exp]	8.5	0.9864
AT1G17930			Aminotransferase-like, plant m...		Lus10031075 [exp]	9.2	0.9864
AT5G23960		ATTPS21	terpene synthase 21 (.1.2)		Lus10033189 [exp]	9.8	0.9864

Compare expression of checked genes

Lus10030331 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.