Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G37250 730 / 0 Leucine-rich repeat protein kinase family protein (.1) AT2G23300 685 / 0 Leucine-rich repeat protein kinase family protein (.1) AT5G67280 672 / 0 RLK receptor-like kinase (.1) AT2G15300 497 / 8e-166 Leucine-rich repeat protein kinase family protein (.1) AT2G01210 360 / 3e-113 Leucine-rich repeat protein kinase family protein (.1) AT1G25320 342 / 9e-107 Leucine-rich repeat protein kinase family protein (.1) AT4G34220 278 / 2e-82 Leucine-rich repeat protein kinase family protein (.1) AT2G42290 260 / 1e-76 Leucine-rich repeat protein kinase family protein (.1) AT3G17840 201 / 2e-55 RLK902 receptor-like kinase 902 (.1) AT1G67510 201 / 1e-54 Leucine-rich repeat protein kinase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10010263 [exp] 1213 / 0 AT4G37250 798 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10019315 [exp] 774 / 0 AT4G37250 728 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10011509 [exp] 771 / 0 AT4G37250 739 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10034108 [exp] 307 / 2e-93 AT2G01210 860 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10014098 [exp] 302 / 1e-90 AT4G37250 710 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10019816 [exp] 269 / 3e-84 AT5G67280 275 / 8e-87 receptor-like kinase (.1) Lus10037006 [exp] 204 / 4e-56 AT1G67510 915 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10015799 [exp] 199 / 9e-54 AT1G67510 959 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10033569 [exp] 194 / 4e-52 AT1G66830 665 / 0.0 Leucine-rich repeat protein kinase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G142300 [exp] 848 / 0 AT4G37250 733 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.007G048800 [exp] 846 / 0 AT2G23300 706 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.001G300700 [exp] 659 / 0 AT4G34220 620 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.008G124300 [exp] 384 / 2e-122 AT2G01210 987 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.010G120100 [exp] 376 / 2e-119 AT2G01210 1013 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.004G095700 [exp] 305 / 1e-92 AT2G01210 735 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.008G176900 [exp] 216 / 4e-60 AT1G67510 923 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.010G058200 [exp] 214 / 5e-59 AT1G67510 989 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.017G119000 [exp] 197 / 1e-53 AT2G01210 711 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.013G158800 [exp] 175 / 3e-46 AT5G58300 798 / 0.0 Leucine-rich repeat protein kinase family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF00069 [flax] [poplar] Pkinase Protein kinase domain CL0022 [flax] [poplar] LRR PF00560 [flax] [poplar] LRR_1 Leucine Rich Repeat CL0022 [flax] [poplar] PF08263 [flax] [poplar] LRRNT_2 Leucine rich repeat N-terminal domain
Representative CDS sequence Show only first row Show all	>Lus10030333 pacid=23153185 polypeptide=Lus10030333 locus=Lus10030333.g ID=Lus10030333.BGIv1.0 annot-version=v1.0 ATGAGCTACTACCAAGTTGGTCTTCTCCAACTTGAGTTTCTGTTTCTCCTTCTTCTTCAGATTTGTTCTGCAATCAACACTGATGGAATTCTCTTACTCT CCTTCAAGTTCTCAATCCTCAGTGATCCTCTCAACATCCTCCAGGACTGGAACTACTACGACCCATCTCCCTGCTACTGGACTGGCGTCGTTTGCTCCTC TCCCTCTGGTATCGACGGCTCCCTTGCTCGAGTCGTAGCCTTATCCCTTCCCAATTCTCAGCTACTCGGCTCCATCCCTGCTGATCTAACCTCCATTGAG CATCTCCATACCCTCGATCTCTCCAACAACTCCCTAAATGGTTCTCTCCCTGCTACCATTTTCAACGCTACCCAGCTCCGCTCTCTCGATCTCTCCAATA ACCTATTCTCCGGTCAAATCCCGGATACCGTTGCCCAGTTACACAGCCTTGTCATGCTTAATTTGTCTGACAATGCATTGACCGGTAATTTGCCTCTTCA CATCACTTGCCTCCAAAATCTGACGGAGCTCTCTCTCACTAATAATTACTTCACCGGCGGCCTTCCTTCTGGGTTTAATTCCGTTGAAGTTCTCCAGCTC TCATCCAATCTTATTAACGGATCTCTACCTCCTGATTTTGGTGGTAAAAGACTCCGTTACTTCAACATCTCCTACAACAGGGTTTCCGGCTCCATTCCCA AAGAATTTGCAGCCGACATCCCGGGTAATGCCACTTTGGATCTTTCTTTCAACAATCTCACTGGGGAAATCCCTGATTCCACAGTTTTTTTCAATCAGAA ATCCGGTATTTTCTCTGGCAACTCTGACCTCTGCGGCCGCCCGACTTTTAACCCCTGTCCAATTCCTTCTAGTCCTCTTGTAAATTCCTCTGCCCAAACT TCGCCTCCTGCACTTGCCGTGATTCCAAAGCCGGCCACCTCAGGCCATGCTGATTCTGCGAACAAAGGACAGAGCAGCAACAGGCTGAGAACGGGGACTA TCGTCGGGATCGTACTCGGCGATGTGGCCGGAGTCGCGATTCTGTTCGTCGTGTTCTTCTATGTATATTACTTCATTCAGGAAAGAAAGAAGAAGAAGAA GATCGAAACGGAAATACTAAACGATGTTGGACTCGACCAGGGCGATTCAACTTCGTCGTCATCCTCCTCTGAATCCAGAGGGTTTACGAGATGGTCTTGC CTGCGGAAGAAGAGCGAGAATAACGAAGATGATTCCGATTCGTCCACTTCCGACACCTACGAGCTGGACTCGAAATCAGCCGCTGCCGTCGATCAGAGCA GCAGCAACAGCAACGGCGCCAAAAACGGGACACTGGTGAGCGTTGACGGCGAGAAGGAGCTGGAACTGGAGTCTCTCCTCCGAGCTTCGGCTTACATTCT GGGAGCTACCGGATCAAGCATAGTGTATAAGGCGGTGCTGGAAGACGGAACATCTCTGGCCGTCCGCCGAATTGGGGAAACCCACGTCGAGCGATTTAGG GATTTCGAGAACCAGGTCCGGATAACATCCAGATTGGTCCACCCGAATCTCGTCCGGATCCGGGGGTTCTATTGGGGACCGGAGGAAAAGCTCATAATCT ACGATTTCGTTCCCAACGGCAGCCTGGCCAACGCTCGTTACAGGAAAGCCGGAGGAGGATCGTCGCCGTGTCATTTGCCGTGGGAGTCCCGGCTGAAGAT AGCGAGAGGAGTAGCCCGTGGGCTTTCCTTCCTTCACGATAAGAAGCACGTCCACGGAAACTTAAAGCCCAATAATATTCTATTGGGCTTAGATATGGAG CCTAAGTTAGGAGACTTTGGGCTTGAAAAGCTCATCACCGGCGATACAAGCTCCAAAGCCGGTGGTTCGGCACGGAATTTCGGGAGCAAGAGGTCAACGG CGTCCCGAGACGACTTGTCGTCCACAGGGCCAAGCCCTAGTCCAAGCCCCAGCTCGATCGGAGGGCTGTCTCCGTATCATGCACCTGAATCACTCAGAAG TATAAAGCCCAACCCGAAGTGGGACGTGTATTCGTTTGGGGTGATATTGCTTGAGCTACTTACGGGTAAGGTTATAATTGTAGACGAGACGGGTCAAGGA AGCAATGGGCTTGCAGTAGAGGACAACGCCCGTGCATTGCGTATGGCTGATGTGTCGATTCGAGCTGATGTGGAAGGGAAAGAAGAGGCTTTGTTGGCAT GTTTTAAGTTAGGTTATAGTTGTGCATCTCCAATCCCTCACAAAAGACCAAACATGAAAGAAGCTTTGCAAATTCTTGACAGGATCCCTACGCCACCTCC TGCTTCTTCGGCATTCCTTTATGGTCTATAA
AA sequence Show only first row Show all	>Lus10030333 pacid=23153185 polypeptide=Lus10030333 locus=Lus10030333.g ID=Lus10030333.BGIv1.0 annot-version=v1.0 MSYYQVGLLQLEFLFLLLLQICSAINTDGILLLSFKFSILSDPLNILQDWNYYDPSPCYWTGVVCSSPSGIDGSLARVVALSLPNSQLLGSIPADLTSIE HLHTLDLSNNSLNGSLPATIFNATQLRSLDLSNNLFSGQIPDTVAQLHSLVMLNLSDNALTGNLPLHITCLQNLTELSLTNNYFTGGLPSGFNSVEVLQL SSNLINGSLPPDFGGKRLRYFNISYNRVSGSIPKEFAADIPGNATLDLSFNNLTGEIPDSTVFFNQKSGIFSGNSDLCGRPTFNPCPIPSSPLVNSSAQT SPPALAVIPKPATSGHADSANKGQSSNRLRTGTIVGIVLGDVAGVAILFVVFFYVYYFIQERKKKKKIETEILNDVGLDQGDSTSSSSSSESRGFTRWSC LRKKSENNEDDSDSSTSDTYELDSKSAAAVDQSSSNSNGAKNGTLVSVDGEKELELESLLRASAYILGATGSSIVYKAVLEDGTSLAVRRIGETHVERFR DFENQVRITSRLVHPNLVRIRGFYWGPEEKLIIYDFVPNGSLANARYRKAGGGSSPCHLPWESRLKIARGVARGLSFLHDKKHVHGNLKPNNILLGLDME PKLGDFGLEKLITGDTSSKAGGSARNFGSKRSTASRDDLSSTGPSPSPSPSSIGGLSPYHAPESLRSIKPNPKWDVYSFGVILLELLTGKVIIVDETGQG SNGLAVEDNARALRMADVSIRADVEGKEEALLACFKLGYSCASPIPHKRPNMKEALQILDRIPTPPPASSAFLYGL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G37250			Leucine-rich repeat protein ki...		Lus10030333 [exp]	0	1
AT5G40150			Peroxidase superfamily protein...		Lus10039471 [exp]	3.0	0.8533
AT1G06475			unknown protein		Lus10020752 [exp]	3.7	0.8341
AT2G02010		GAD4	glutamate decarboxylase 4 (.1)		Lus10031934 [exp]	4.9	0.7887
AT3G51550		FER	FERONIA, Malectin/receptor-lik...		Lus10022728 [exp]	8.7	0.8242
AT5G20680		TBL16	TRICHOME BIREFRINGENCE-LIKE 16...		Lus10027651 [exp]	10.4	0.8153
AT5G61240			Leucine-rich repeat (LRR) fami...		Lus10026651 [exp]	13.7	0.7897
AT3G15470			Transducin/WD40 repeat-like su...		Lus10027670 [exp]	16.2	0.7766
AT1G02000		GAE2	UDP-D-glucuronate 4-epimerase ...		Lus10027195 [exp]	16.9	0.7873
					Lus10006920 [exp]	17.2	0.7624
AT2G26730			Leucine-rich repeat protein ki...		Lus10033065 [exp]	18.8	0.8196

Compare expression of checked genes

Lus10030333 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.