Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G67290 227 / 3e-71 FAD-dependent oxidoreductase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G060500 [exp] 279 / 6e-92 AT5G67290 528 / 0.0 FAD-dependent oxidoreductase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [flax] [poplar] NADP_Rossmann PF01266 [flax] [poplar] DAO FAD dependent oxidoreductase
Representative CDS sequence Show only first row Show all	>Lus10030334 pacid=23153047 polypeptide=Lus10030334 locus=Lus10030334.g ID=Lus10030334.BGIv1.0 annot-version=v1.0 ATGATGTTAACATCACCGCCGCCATCTCTCACACTCTCTCCGCCACTCCTACCAAATCCAAATCCTCCGCCGACCTTTCCCAATCGCCTCTGCGAAATTC ACCTGCGTCCCGTCTCAATCGCCCGCTATGGACCTTCAACAAAAACCTATTCGCCATGTCGTCGTCTGCGGCGGTGGGGTAATCGGAGTCTGCACAGCCT ACTTCTTAGCCAAAAAGGGGGCATCGGTTACACTCGTCGAGAAATCCTCTGTCGCCTGCGCAGCCTCGGGGAAGGCCGGCGGATTCCTCGCCCTCGATTG GTGCGATGGAGGCCCAGTACGCCCACTCGCTCGAGCCAGCTTCAATCTCCACCGCTCCCTCGCCCAGAACTACGGCTACCGTCCCCTTACCACGCTCAGT CTCACGGTGACAGAGTCGGAATCAGGGAATCAATCGCACAGTCAGATAAAGAAAATTCCCGATTGGGTAGATGGGCCAGCGCGTGGGCCGAGGACGATCG GGACGACGCAACAACTGCCCAAGTGCATCCTCAGATGTTTACGAGGACTCTAATATGGGAAACCGTGGAGAAGGATGGACTTGAGGTGGTGATCGGGAAA GTTGAGACGGTGATGGTTGAAGGAGGACGAGTTGACTCGGTAGTGTTTGAGTGCGGAAGAGTGATCGAATCGGATGCTGTAGTTCTGGCTCTTGGGCCCT GGTGTGGAAAGTTTGAGATGTTGAAGTCGCTGTTCCGGGTTTGTGGGCTGAGAGCCCATAGTTTAGTTCTGGAGCCCAAGAATCCTGATGCAATAGCGCG TCATGCTCTTTTCTTGAGTTATTATACGGCCCAAGGAGTGAAGCCCATCGATCCCGAGGTATACCCACGGCCCACAGGGGAGGTGTATTTGTGCGGAATG TCGTCAGACGTAGAGGTGCCAGATGATCCAGAGCACATAACAGGCCACCCGGAGTCGATACAGGTGCTCAAGAGGGTAGCCAAGACGGTTTCTAGCCACT TGGGGGAGGGGGAAGCAAAAATGGGATGCTAG
AA sequence Show only first row Show all	>Lus10030334 pacid=23153047 polypeptide=Lus10030334 locus=Lus10030334.g ID=Lus10030334.BGIv1.0 annot-version=v1.0 MMLTSPPPSLTLSPPLLPNPNPPPTFPNRLCEIHLRPVSIARYGPSTKTYSPCRRLRRWGNRSLHSLLLSQKGGIGYTRREILCRLRSLGEGRRIPRPRL VRWRPSTPTRSSQLQSPPLPRPELRLPSPYHAQSHGDRVGIRESIAQSDKENSRLGRWASAWAEDDRDDATTAQVHPQMFTRTLIWETVEKDGLEVVIGK VETVMVEGGRVDSVVFECGRVIESDAVVLALGPWCGKFEMLKSLFRVCGLRAHSLVLEPKNPDAIARHALFLSYYTAQGVKPIDPEVYPRPTGEVYLCGM SSDVEVPDDPEHITGHPESIQVLKRVAKTVSSHLGEGEAKMGC

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G67290			FAD-dependent oxidoreductase f...		Lus10030334 [exp]	0	1
AT5G59050			unknown protein		Lus10001433 [exp]	3.9	0.8331
AT5G58380		PKS2, CIPK10, S...	SNF1-RELATED PROTEIN KINASE 3....		Lus10042229 [exp]	9.1	0.8498
AT4G09460	MYB	ATMYB6, ATMYB8	myb domain protein 6 (.1)		Lus10009448 [exp]	9.2	0.8210
AT3G13062			Polyketide cyclase/dehydrase a...		Lus10034791 [exp]	9.5	0.8490
AT2G35940	HD	BLH1, EDA29	embryo sac development arrest ...		Lus10013579 [exp]	11.5	0.8001
AT5G22290	NAC	FSQ6, FAN, ANAC...	fructose-sensing quantitative ...		Lus10034183 [exp]	15.1	0.7725
AT1G13990			unknown protein		Lus10037142 [exp]	19.2	0.8009
AT4G17900			PLATZ transcription factor fam...		Lus10020337 [exp]	21.5	0.7887
AT1G53590		NTMCTYPE6.1 ,NT...	Calcium-dependent lipid-bindin...		Lus10005578 [exp]	24.0	0.7682
AT5G27280			Zim17-type zinc finger protein...		Lus10034555 [exp]	24.0	0.7979

Compare expression of checked genes

Lus10030334 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.