Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G19710 1412 / 0 AK-HSDHII, AK-HSDH ,AK-HSDH II aspartate kinase-homoserine dehydrogenase ii (.1.2) AT1G31230 1371 / 0 AK-HSDHI ,AK-HSDH I aspartate kinase-homoserine dehydrogenase i (.1) AT5G21060 176 / 4e-48 Glyceraldehyde-3-phosphate dehydrogenase-like family protein (.1.2.3) AT5G14060 168 / 5e-44 CARAB-AK-LYS Aspartate kinase family protein (.1.2) AT3G02020 164 / 2e-42 AK3 aspartate kinase 3 (.1) AT5G13280 157 / 2e-40 AK1, AK-LYS1 aspartate kinase 1 (.1) AT3G18680 47 / 3e-05 Amino acid kinase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10041071 [exp] 1733 / 0 AT4G19710 1373 / 0.0 aspartate kinase-homoserine dehydrogenase ii (.1.2) Lus10003073 [exp] 173 / 4e-47 AT5G21060 553 / 0.0 Glyceraldehyde-3-phosphate dehydrogenase-like family protein (.1.2.3) Lus10034077 [exp] 171 / 2e-46 AT5G21060 561 / 0.0 Glyceraldehyde-3-phosphate dehydrogenase-like family protein (.1.2.3) Lus10012568 [exp] 166 / 3e-43 AT5G14060 820 / 0.0 Aspartate kinase family protein (.1.2) Lus10041523 [exp] 166 / 6e-43 AT5G14060 824 / 0.0 Aspartate kinase family protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G071700 [exp] 1510 / 0 AT4G19710 1470 / 0.0 aspartate kinase-homoserine dehydrogenase ii (.1.2) Potri.013G099500 [exp] 1483 / 0 AT4G19710 1425 / 0.0 aspartate kinase-homoserine dehydrogenase ii (.1.2) Potri.004G196200 [exp] 173 / 3e-47 AT5G21060 509 / 0.0 Glyceraldehyde-3-phosphate dehydrogenase-like family protein (.1.2.3) Potri.014G145700 [exp] 171 / 7e-45 AT5G14060 805 / 0.0 Aspartate kinase family protein (.1.2) Potri.002G236800 [exp] 168 / 8e-44 AT3G02020 845 / 0.0 aspartate kinase 3 (.1) Potri.005G057700 [exp] 44 / 0.0003 AT3G18680 467 / 1e-166 Amino acid kinase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [flax] [poplar] NADP_Rossmann PF03447 [flax] [poplar] NAD_binding_3 Homoserine dehydrogenase, NAD binding domain CL0070 [flax] [poplar] ACT PF01842 [flax] [poplar] ACT ACT domain CL0139 [flax] [poplar] GADPH_aa-bio_dh PF00742 [flax] [poplar] Homoserine_dh Homoserine dehydrogenase CL0139 [flax] [poplar] PF00696 [flax] [poplar] AA_kinase Amino acid kinase family
Representative CDS sequence Show only first row Show all	>Lus10030339 pacid=23153202 polypeptide=Lus10030339 locus=Lus10030339.g ID=Lus10030339.BGIv1.0 annot-version=v1.0 ATGGCGTTCGCAGCTTCGATCTCCGCCGTCAACTTTCGCCTCCTCTCAGCCACTGCATTGCCTCACGATTCGCTCAAGGAGAAAAACATTCAGAAGACCT CTATCCCTTCTTATTTGTCTCTTCTCCATCCTGGCTCCCCTGCCTTCAGACCAGGGAATGTTCCTCCTCGTGGAAGAAAGGAGTCGTCTCGGAGCCATGC TGCTTCTTCTGCTGCTAAAGCTGTTTTACTGGATGAATCCAAGGAAAAGGTTCAACAGCATAAGAGTACCTCCTGGTCAGTCCATAAGTTTGGGGGCACC TGCGTGGGAAGTTCTGAGAGGATAAAGAATGTGGCGGAGATTATTGCCAATGACTCCTCTGAAGGGAAGTTTGTGGTGGTGTCGGCAATGTCAAAGGTGA CGGATATGATGTATGACTTAATCAATAGGGCGCAGTCGAGAGATGAATCGTTTGTTGCTGCTGCTGATGCTGTATTTGAGAAGCATAGGTTAACAGCTAC AGATCTTCTAGAAGGAGATGATCTTGCTGCATTTTTGTCACGGTTGCATCACGATATCACCAACCTTAAAGCCATGCTCCGTGCCATATATATAGCTGGT CACACAACAGAATCTTTTGAGAATTTCGTTGTAGGACATGGAGAGTTGTGGTCTGCTCAGCTGCTGTCTTATGTTGTGAAGAAGAATGGACTTGATTGCA AATGGATGGATACAAGAGATGTTCTTATCGTCAACCCTGTTAGTTCTATTCAAGTTGACCCAGATTATGTTGAATCTGAAAGGAGACTTGAACAATGGTT CACTGAAAATCCATCCAAGGCGGTTGTTGCTACTGGTTTCATAGCCAGCACACCTCAAAACATTCCAACAACTTTGAAGAGGGATGGTAGTGACTTCTCT GCCGCTATAATGGGTGCATTGTTGAGGGCCGCACAAGTGACTATATGGACGGATGTTGATGGGGTCTTTAGTGCAGACCCTAGGAAAGTTAGCGAGGCTG TGATATTGAAGACCCTGTCCTACCAAGAAGCTTGGGAAATGTCATATTTTGGGGCAAATGTTTTGCATCCTCGAACGATAATTCCAGTGATGCGGTATGA CATTCCAATTGTCATAAGGAATATTTTTAACCTATCCGCACCGGGCACCATGATATGTAGACCTTCAACCGGTGAGGAGGAACATGGTCAAATTACAGAT TTCCCTGTCAGAGGGTTTGCAACAATTGACAATGTCGCTCTTGTGAATGTTGAAGGGACGGGAATGGCTGGTATCCCTGGTACAGCTAGCGCTATCTTTG GTGCTGTCAAAGATGTGGGTGCTAATGTTATCATGATATCACAGGCTAGTAGTGAACATTCTGTTTGCTTTGCCGTGCCCGAGAAAGAAGTCAAAGCTGT TGCAGATGCTTTAAAATCCAGATTTCGTGAAGCTCTAAATGCTGGACGTCTTTCAAAGGTTGCAGTCATTCCAAATTGTAGCATTCTGGCTGCTGTGGGT CAGAAAATGGCTAGCACGCCTGGTGTCAGTGCTACTCTTTTCAATGCCCTAGCTAAGGCAAATATTAATGTACGTGCCATAGCTCAAGGTTGTTCAGAGT ATAACGTCACGGTAGTCGTCAAGCGTGAAGATTGTGTAAGGGCACTAAGAGCTGCTCACTCCAGATTTTATCTCTCGGAGACAACAATATCAGTGGGCAT TGTTGGACCTGGTTTGATAGGTGCCACATTACTTGACCAGCTTAGAGATCAGGCAGCAGTTCTGAAAGAGGACTTCAACATCGAGCTGCGTGTTATGGGC ATCACTGGCTCAAGGACAATGCTTTTGAGTAATTCTGGGATTGACCTGTCAAGATGGAGAGAACTTATGAAATCGAAAGGAGAAGTCGCTGATCTCCAGA AATTCACGCATCATGTTCAAGGAAATCATTTTATCCCAAATACTGTCTTGGTAGATTGCACGGCGGATGCTGCAATTGCTAGCCATTACTACGATTGGCT GCGAAAAGGAATCCATGTTGTTACTCCAAACAAAAAGGCAAATTCAGGTCCACTTGATCAGTATTTGAAGCTCAGAGCGCTTCAGAGGCAATCATACACA CATTACTTTTACGAGGCAACTGTTGGAGCAGGCCTCCCAATTATCAGCACTTTAAGAGGTCTCCTTGAAACTGGGGATAAGATACTTGAAATTGAAGTCT GCTGTGTTGTTCCACCTGGGTTTCTTTCTCTTGACACAAGCTTGTCACGCCATATGTGCAGTGGTACTTTGAGTTATATCTTCAACAACTTTGTGGGGGA TAGAGCATTTAGTGATGTAGTGTCAGAGGCAAAGGAGAAAGGTTATACGGAACCAGATCCAAGGGATGATCTGTCTGGAACAGATGTTGCTCGCAAGGTC ATAATCCTTGCAAGAGAATCTGGTTTGAAGTTAGAACTTACTGATATCCCTGTACAAAGTCTAGTTCCAGAGCCCCTCAGAGCAAGTGAATCTGCTGATG AGTTCATGAAGCAGCTGCCCAAATTTGACCAAGACATAGCCAAGGAACGACGAGCTGCTGAGGCCAACGGGGATGTGTTGAGATACGTTGGAGTGGTAGA TGTCATACATGCAGAAGGACGAGTAGAACTGAGACGATACAAGAAAGATCACGCATTTGCTCAGCTTTCTGGGTCGGACAACATCATAGCATTCACTACA AGCAGATACAAGGAACAGCCCTTGATAGTGAGGGGACCAGGTGCAGGTGCTCAAGTCACTGCAGGTGGTGTGTTCAGCGACATACTGCGGCTAGCTTCCT ACCTTGGAGCTCCATCATAA
AA sequence Show only first row Show all	>Lus10030339 pacid=23153202 polypeptide=Lus10030339 locus=Lus10030339.g ID=Lus10030339.BGIv1.0 annot-version=v1.0 MAFAASISAVNFRLLSATALPHDSLKEKNIQKTSIPSYLSLLHPGSPAFRPGNVPPRGRKESSRSHAASSAAKAVLLDESKEKVQQHKSTSWSVHKFGGT CVGSSERIKNVAEIIANDSSEGKFVVVSAMSKVTDMMYDLINRAQSRDESFVAAADAVFEKHRLTATDLLEGDDLAAFLSRLHHDITNLKAMLRAIYIAG HTTESFENFVVGHGELWSAQLLSYVVKKNGLDCKWMDTRDVLIVNPVSSIQVDPDYVESERRLEQWFTENPSKAVVATGFIASTPQNIPTTLKRDGSDFS AAIMGALLRAAQVTIWTDVDGVFSADPRKVSEAVILKTLSYQEAWEMSYFGANVLHPRTIIPVMRYDIPIVIRNIFNLSAPGTMICRPSTGEEEHGQITD FPVRGFATIDNVALVNVEGTGMAGIPGTASAIFGAVKDVGANVIMISQASSEHSVCFAVPEKEVKAVADALKSRFREALNAGRLSKVAVIPNCSILAAVG QKMASTPGVSATLFNALAKANINVRAIAQGCSEYNVTVVVKREDCVRALRAAHSRFYLSETTISVGIVGPGLIGATLLDQLRDQAAVLKEDFNIELRVMG ITGSRTMLLSNSGIDLSRWRELMKSKGEVADLQKFTHHVQGNHFIPNTVLVDCTADAAIASHYYDWLRKGIHVVTPNKKANSGPLDQYLKLRALQRQSYT HYFYEATVGAGLPIISTLRGLLETGDKILEIEVCCVVPPGFLSLDTSLSRHMCSGTLSYIFNNFVGDRAFSDVVSEAKEKGYTEPDPRDDLSGTDVARKV IILARESGLKLELTDIPVQSLVPEPLRASESADEFMKQLPKFDQDIAKERRAAEANGDVLRYVGVVDVIHAEGRVELRRYKKDHAFAQLSGSDNIIAFTT SRYKEQPLIVRGPGAGAQVTAGGVFSDILRLASYLGAPS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G19710		AK-HSDHII, AK-H...	aspartate kinase-homoserine de...		Lus10030339 [exp]	0	1
AT5G16750		TOZ	TORMOZEMBRYO DEFECTIVE, Transd...		Lus10012706 [exp]	1.4	0.9609
AT3G23940			dehydratase family (.1.2)		Lus10034822 [exp]	1.7	0.9545
AT4G19710		AK-HSDHII, AK-H...	aspartate kinase-homoserine de...		Lus10041071 [exp]	2.8	0.9555
AT5G43500		ATARP9	actin-related protein 9 (.1.2)		Lus10022198 [exp]	3.2	0.9479
AT1G74040		IPMS2, MAML-3, ...	SOPROPYLMALATE SYNTHASE 2, 2-i...		Lus10019573 [exp]	4.0	0.9522
AT5G20045			unknown protein		Lus10019440 [exp]	6.9	0.9351
AT1G54510		ATNEK1	NIMA-related serine/threonine ...		Lus10009186 [exp]	7.5	0.9301
AT3G28730		NFD, SSRP1, ATH...	NUCLEOSOME/CHROMATIN ASSEMBLY ...		Lus10042065 [exp]	9.2	0.9348
AT1G54510		ATNEK1	NIMA-related serine/threonine ...		Lus10000148 [exp]	10.2	0.9243
AT3G03420			Ku70-binding family protein (....		Lus10014579 [exp]	14.1	0.9160

Compare expression of checked genes

Lus10030339 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.