Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G40180 157 / 7e-47 ATHPP2C5 phosphatase 2C5 (.1) AT1G07160 156 / 2e-46 Protein phosphatase 2C family protein (.1) AT2G30020 149 / 1e-43 Protein phosphatase 2C family protein (.1) AT1G67820 133 / 3e-37 Protein phosphatase 2C family protein (.1) AT4G08260 112 / 7e-31 Protein phosphatase 2C family protein (.1) AT1G43900 108 / 3e-28 Protein phosphatase 2C family protein (.1) AT5G53140 106 / 3e-27 Protein phosphatase 2C family protein (.1) AT5G51760 103 / 3e-26 AHG1 ABA-hypersensitive germination 1, Protein phosphatase 2C family protein (.1) AT4G31750 102 / 3e-26 WIN2 HOPW1-1-interacting 2 (.1) AT5G10740 102 / 4e-26 Protein phosphatase 2C family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10041072 [exp] 338 / 2e-118 AT1G07160 238 / 3e-76 Protein phosphatase 2C family protein (.1) Lus10042275 [exp] 155 / 4e-46 AT1G07160 392 / 1e-135 Protein phosphatase 2C family protein (.1) Lus10026381 [exp] 154 / 1e-45 AT1G07160 390 / 4e-135 Protein phosphatase 2C family protein (.1) Lus10036871 [exp] 119 / 6e-32 AT1G67820 380 / 1e-129 Protein phosphatase 2C family protein (.1) Lus10019012 [exp] 112 / 1e-29 AT5G53140 474 / 2e-167 Protein phosphatase 2C family protein (.1) Lus10014926 [exp] 109 / 7e-29 AT5G53140 448 / 3e-158 Protein phosphatase 2C family protein (.1) Lus10030115 [exp] 105 / 2e-27 AT2G25620 234 / 1e-74 DNA-binding protein phosphatase 1 (.1) Lus10042430 [exp] 104 / 2e-27 AT4G31750 452 / 2e-162 HOPW1-1-interacting 2 (.1) Lus10026239 [exp] 104 / 2e-27 AT4G31750 454 / 3e-163 HOPW1-1-interacting 2 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G099400 [exp] 222 / 2e-71 AT1G07160 272 / 1e-87 Protein phosphatase 2C family protein (.1) Potri.019G071600 [exp] 214 / 7e-68 AT1G07160 268 / 8e-86 Protein phosphatase 2C family protein (.1) Potri.009G073000 [exp] 160 / 1e-47 AT2G30020 466 / 9e-164 Protein phosphatase 2C family protein (.1) Potri.008G070400 [exp] 158 / 3e-47 AT2G40180 365 / 1e-124 phosphatase 2C5 (.1) Potri.001G278500 [exp] 152 / 6e-45 AT2G30020 451 / 2e-158 Protein phosphatase 2C family protein (.1) Potri.010G187000 [exp] 152 / 7e-45 AT2G30020 381 / 6e-131 Protein phosphatase 2C family protein (.1) Potri.010G047600 [exp] 134 / 2e-37 AT1G67820 399 / 2e-136 Protein phosphatase 2C family protein (.1) Potri.012G002100 [exp] 109 / 8e-29 AT5G53140 486 / 2e-172 Protein phosphatase 2C family protein (.1) Potri.015G018800 [exp] 109 / 1e-28 AT1G07430 236 / 2e-74 highly ABA-induced PP2C gene 2 (.1) Potri.015G019200 [exp] 105 / 3e-27 AT5G53140 492 / 5e-175 Protein phosphatase 2C family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0238 [flax] [poplar] PP2C PF00481 [flax] [poplar] PP2C Protein phosphatase 2C
Representative CDS sequence Show only first row Show all	>Lus10030340 pacid=23153104 polypeptide=Lus10030340 locus=Lus10030340.g ID=Lus10030340.BGIv1.0 annot-version=v1.0 ATGAATGAGCAGGGTGTTAGAAGTGGAGCTTGTACAGCAAGCGTGGTGTTAAAGAATGGCGAATTGCACATCGCAAACGTAGGAGATTGCAGGGTAGTAC TAAGCAGAAATGGGGTAGCAACTCCATTAACACTCGATCATCGCGTGAACTCCAGAGAGGACGAGTGTTTGCGCATTCAGAACTCGGGCGGCTACGTGCT TGGCGGAAGGGTGCAAGCTACACTGGCGGTTTCGAGAGCGATCGGGGACCTACATCTGAAGGAATGGGTGATATCGGAGCCAGAAATGGGTAAAGTTGAA CTGAGCCCTGATTGCCAGTTCTTGGTCATGGCTTCTGATGGGCTGTGGGATAAGGTTGGCGAGCAAGAGGCAGTTGATGAAGTTTCGAGACATATAATAA GTAGTAACAGTAATAATATTCTTAATGTTAATGGTGGTGTGATGGAATCATGCCAGAAGCTGGTGGAACTGGCTTTCAGTAGAGGCAACTTGGACGATGC TACTGTTATGGTTGTAAGCCTTGCCAATTTTGTGCAACCACCACTCTTCAACGGCTCATGA
AA sequence Show only first row Show all	>Lus10030340 pacid=23153104 polypeptide=Lus10030340 locus=Lus10030340.g ID=Lus10030340.BGIv1.0 annot-version=v1.0 MNEQGVRSGACTASVVLKNGELHIANVGDCRVVLSRNGVATPLTLDHRVNSREDECLRIQNSGGYVLGGRVQATLAVSRAIGDLHLKEWVISEPEMGKVE LSPDCQFLVMASDGLWDKVGEQEAVDEVSRHIISSNSNNILNVNGGVMESCQKLVELAFSRGNLDDATVMVVSLANFVQPPLFNGS

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G40180		ATHPP2C5	phosphatase 2C5 (.1)		Lus10030340 [exp]	0	1
AT5G11420			Protein of unknown function, D...		Lus10019724 [exp]	10.2	0.9277
AT2G36530		ENO2, LOS2	LOW EXPRESSION OF OSMOTICALLY ...		Lus10038904 [exp]	16.1	0.9242
AT3G17860	ZIM	TIFY6B, JAI3, J...	JASMONATE-INSENSITIVE 3, jasmo...		Lus10031333 [exp]	16.7	0.9223
AT5G24600			Protein of unknown function, D...		Lus10013947 [exp]	21.6	0.9222
AT3G08030			Protein of unknown function, D...		Lus10019723 [exp]	25.6	0.9209
AT3G14880			unknown protein		Lus10042453 [exp]	36.4	0.9162
AT5G51890			Peroxidase superfamily protein...		Lus10038054 [exp]	38.4	0.9010
AT2G18670			RING/U-box superfamily protein...		Lus10019979 [exp]	38.7	0.9141
AT5G59350			unknown protein		Lus10004955 [exp]	45.0	0.9167
					Lus10018421 [exp]	45.7	0.9111

Compare expression of checked genes

Lus10030340 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.