Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G13530 139 / 4e-39 unknown protein AT4G10080 118 / 1e-30 unknown protein AT4G00355 41 / 0.0006 ATI2 ATG8-interacting protein 2, unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10041074 [exp] 428 / 1e-151 AT4G13530 170 / 2e-50 unknown protein Lus10003531 [exp] 240 / 8e-75 AT4G13530 186 / 7e-55 unknown protein Lus10002932 [exp] 231 / 1e-74 AT4G13530 176 / 7e-54 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G071300 [exp] 234 / 6e-75 AT4G10080 125 / 3e-33 unknown protein Potri.013G099200 [exp] 201 / 5e-62 AT4G13530 116 / 3e-30 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10030342 pacid=23153030 polypeptide=Lus10030342 locus=Lus10030342.g ID=Lus10030342.BGIv1.0 annot-version=v1.0 ATGGAAGCTGGTGATCCTTCGCTAGATATTCACGACTGGGAGGTCCTGTCTAATTCCGACTCCGAAGCTGTTGTTTACCCAGACAATCCCAGGAATTTCG AGGAAATCGAGGCTGATTCCGGCGGGATGATCAGGTTGGATCATTTCTCTATCCATACTAACAATATGTTTGATGATAGTAGTAAAGCTGTCGTTGTTTC TGGTGCTAGTGATGTAGAGAGTCCTGTTGAGTCTGATCATCCGAGTTGGATTGATCCTGCGCTTCATACTCGTTATGAGAATAAGAATCCGGCTGAACTA TGGTCTGATTCCGGCAGTGATCGTTCTGATGGACGCAAAGTTAGCGACTTTGAGTTGAGAAATGAATTGGGTGTTGAGGAAATGGCCAAGACGGGTTTAG GGTCCGGAGGAGTTGAGGGAACTGGAAGTAAAGATATTATTGTGGAAAGCCAACTTGGTTTCGAAGAATTTGAGCAGAATAAGAGCAAGGGAGATGACAT GTTAACGTTCTGGTCTGATTCTCGTGGTGAGGATCTTCTTGTTCGTGATGCTAGTGTTGGAGGCTCGAGTTTGGAGGCTTCAAGCGAAGCTGCCGATGGA GGAAATGATTCAGTGGAGGAAACTAGTATTGTTGAGGCTGGTGGTGGCGAAGAGAATAAGAAGAAGCAATTGGTGTGGTGGAAAGTCCCATTTGAACTGT TGAGGTGTTGTGTTTTCCGAGTTGGGCCTGTGTGGACTTTCTCAATGGCTGCTGCTATGATGGGATTTGTAATCTTGAGTCGGAAGTTGTATAAGATGAA GCGCAAGGCAAGGAGCATTGAGCTTAAACTTACTGTGGATGATAAGAAGGTCTCCCAGTTCATGAGCCGTGCTGCTCGTCTGAACGAAGCATTTTCAGTG GTGAGAAGGGTGCCGATCGTCCGGCCAATGGTGCCAGGTGGTGGTGTGAATCCATGGCCTGTGATGAGCATGAGATGA
AA sequence Show only first row Show all	>Lus10030342 pacid=23153030 polypeptide=Lus10030342 locus=Lus10030342.g ID=Lus10030342.BGIv1.0 annot-version=v1.0 MEAGDPSLDIHDWEVLSNSDSEAVVYPDNPRNFEEIEADSGGMIRLDHFSIHTNNMFDDSSKAVVVSGASDVESPVESDHPSWIDPALHTRYENKNPAEL WSDSGSDRSDGRKVSDFELRNELGVEEMAKTGLGSGGVEGTGSKDIIVESQLGFEEFEQNKSKGDDMLTFWSDSRGEDLLVRDASVGGSSLEASSEAADG GNDSVEETSIVEAGGGEENKKKQLVWWKVPFELLRCCVFRVGPVWTFSMAAAMMGFVILSRKLYKMKRKARSIELKLTVDDKKVSQFMSRAARLNEAFSV VRRVPIVRPMVPGGGVNPWPVMSMR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G13530			unknown protein		Lus10030342 [exp]	0	1
AT1G36980			unknown protein		Lus10035779 [exp]	1.0	0.9346
AT2G37550		ASP1, AGD7	yeast pde1 suppressor 1, ARF-G...		Lus10003977 [exp]	1.4	0.9218
AT4G13530			unknown protein		Lus10041074 [exp]	2.0	0.9125
AT4G08230			glycine-rich protein (.1.2)		Lus10041619 [exp]	3.5	0.9137
AT3G05010			Protein of unknown function, t...		Lus10033835 [exp]	3.7	0.8936
AT3G01170			Ribosomal protein L34e superfa...		Lus10030686 [exp]	4.2	0.9034
AT3G57340			Heat shock protein DnaJ, N-ter...		Lus10019421 [exp]	4.5	0.9116
AT5G22360		ATVAMP714	vesicle-associated membrane pr...		Lus10043394 [exp]	5.8	0.8773
AT2G06530		VPS2.1	SNF7 family protein (.1)		Lus10015642 [exp]	7.4	0.8868
AT2G19830		VPS32, SNF7.2	SNF7 family protein (.1)		Lus10012921 [exp]	11.0	0.8874

Compare expression of checked genes

Lus10030342 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.