Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G80560 616 / 0 ATIMD2 ARABIDOPSIS ISOPROPYLMALATE DEHYDROGENASE 2, isopropylmalate dehydrogenase 2 (.1) AT1G31180 593 / 0 IPMDH1, ATIMD3 ISOPROPYLMALATE DEHYDROGENASE 1, ARABIDOPSIS ISOPROPYLMALATE DEHYDROGENASE 3, isopropylmalate dehydrogenase 3 (.1) AT5G14200 590 / 0 ATIMD1 ARABIDOPSIS ISOPROPYLMALATE DEHYDROGENASE 1, isopropylmalate dehydrogenase 1 (.1.2.3) AT5G04800 228 / 1e-72 Ribosomal S17 family protein (.1.2.3.4) AT2G05220 228 / 3e-72 Ribosomal S17 family protein (.1.2) AT2G04390 226 / 1e-71 Ribosomal S17 family protein (.1) AT3G10610 218 / 2e-68 Ribosomal S17 family protein (.1) AT5G03290 135 / 6e-35 IDH-V isocitrate dehydrogenase V (.1) AT3G09810 128 / 3e-32 IDH-VI isocitrate dehydrogenase VI (.1) AT1G80555 118 / 3e-31 Isocitrate/isopropylmalate dehydrogenase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10041077 [exp] 740 / 0 AT1G80560 658 / 0.0 ARABIDOPSIS ISOPROPYLMALATE DEHYDROGENASE 2, isopropylmalate dehydrogenase 2 (.1) Lus10041076 [exp] 273 / 7e-90 AT5G04800 226 / 8e-78 Ribosomal S17 family protein (.1.2.3.4) Lus10021307 [exp] 226 / 1e-71 AT5G04800 231 / 9e-80 Ribosomal S17 family protein (.1.2.3.4) Lus10004208 [exp] 222 / 5e-70 AT2G04390 233 / 4e-80 Ribosomal S17 family protein (.1) Lus10029412 [exp] 222 / 5e-70 AT2G04390 233 / 4e-80 Ribosomal S17 family protein (.1) Lus10016985 [exp] 143 / 1e-40 AT3G10610 143 / 1e-45 Ribosomal S17 family protein (.1) Lus10002221 [exp] 135 / 5e-35 AT5G03290 648 / 0.0 isocitrate dehydrogenase V (.1) Lus10023192 [exp] 135 / 7e-35 AT5G03290 649 / 0.0 isocitrate dehydrogenase V (.1) Lus10013806 [exp] 134 / 3e-34 AT5G03290 642 / 0.0 isocitrate dehydrogenase V (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G185600 [exp] 634 / 0 AT1G80560 639 / 0.0 ARABIDOPSIS ISOPROPYLMALATE DEHYDROGENASE 2, isopropylmalate dehydrogenase 2 (.1) Potri.010G241200 [exp] 224 / 5e-71 AT5G04800 228 / 2e-78 Ribosomal S17 family protein (.1.2.3.4) Potri.008G017300 [exp] 224 / 6e-71 AT5G04800 229 / 1e-78 Ribosomal S17 family protein (.1.2.3.4) Potri.016G073750 [exp] 172 / 1e-51 AT5G04800 171 / 5e-56 Ribosomal S17 family protein (.1.2.3.4) Potri.016G091200 [exp] 134 / 2e-34 AT5G03290 642 / 0.0 isocitrate dehydrogenase V (.1) Potri.006G126700 [exp] 131 / 1e-33 AT5G03290 627 / 0.0 isocitrate dehydrogenase V (.1) Potri.005G099600 [exp] 110 / 3e-26 AT4G35260 613 / 0.0 isocitrate dehydrogenase I, isocitrate dehydrogenase 1 (.1) Potri.004G204300 [exp] 107 / 4e-25 AT4G35260 611 / 0.0 isocitrate dehydrogenase I, isocitrate dehydrogenase 1 (.1) Potri.007G064000 [exp] 105 / 1e-24 AT4G35260 595 / 0.0 isocitrate dehydrogenase I, isocitrate dehydrogenase 1 (.1) Potri.009G165200 [exp] 105 / 2e-24 AT4G35260 621 / 0.0 isocitrate dehydrogenase I, isocitrate dehydrogenase 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00833 [flax] [poplar] Ribosomal_S17e Ribosomal S17 CL0270 [flax] [poplar] Iso_DH PF00180 [flax] [poplar] Iso_dh Isocitrate/isopropylmalate dehydrogenase
Representative CDS sequence Show only first row Show all	>Lus10030344 pacid=23153028 polypeptide=Lus10030344 locus=Lus10030344.g ID=Lus10030344.BGIv1.0 annot-version=v1.0 ATGGCGACTTCTGTGCAAATCAGGTTTAATCCAGTGGGCGCAGCTTCGCAATGTAAGCCTACGTCCAAAATTTCCCGGCGACTGGTTAGAGTCAGTTGCG CGGCCAATGCGTCGCCGAAACAGCACACCATCACTCTTCTCCCCGGAGATGGCATTGGCCCTGAAGTTATCTCCGTTGCCAAGAACGTCCTCAACCTTAC TGCTTCTTTGGAAGGCATTGAGTTTAAATATCAAGAGATGCCGATGGGTGGATCAGCATTGGATTTGGTTGGTGTTCCATTGCCAGATGAAACTCTTGCT GCGGCTAAAAAATCCGATGCAGTTCTTCTTGGAGCAATTGGGGGGTACAAATGGGATAATAATGCAAAACATTTGAAGCCAGAGACTGGATTGCTCCAGA TAAGAGAAGGTCTGAAAGTGTTTGCGAATTTGAGGCCAGCAGCTGTTTTCCCTCAGTTGGTGGAGGCTTCAACGTTGAAGAAAGAAGTTGCTGAAGGTGT TGATGTTATGGTTGTGAGGGAGCTTACAGGAGGTATTTATTTTGGCAAGCCAAGAGGGTTTAGGACAGATGAAAATGGTGAGGAGGTTGGCTTCAATACT GAGGTTTATGCTGCATATGAGATTGATCGCATTGCTCGTGTTGCATTTGAGACTGCTAGGAAGCGGCAAGGGAGGCTTTGTTCTGTGGATAAAGCTAATG TCTTGGAGGCATCAATGTTGTGGAGAAGGCGCGTAACTGCCATTGCTGAAGAGTATCCAGACGTTGCAGTCTCACACATGTATGTTGACAATGCTGCTAT GCAGCTTATAAGGAACCCAAAACAGTTTGATACGATAGTGACAAACAACATATTTGGTGATATACTATCGGATGAGGCATCTATGATCACGGGAAGCATA GGGATGCTTCCATCGGCCAGTCTTGGATCATCAGGTCCTGGACTTTTTGAGCCAATTCATGGTTCTGCTCCTGACATTGCTGGACAGGATAAAGCAAATC CACTGGCGACAATTCTTAGCGCAGCAATGCTTTTGAAATATGGCTTAGGGCAGGAAAGTGCAGCAAAGCGAATTGAGAAGGCAGTACTGGATACCCTAGA CAAGGGATTCCGTACGGGTGACATATATTCACCTGGCACTAAACTGGTGGGATGCAAGGAAATGGGGGAGGCAGTGTTGAGATCAGTCGAGTCCCAGTCC TCCGCAACTTCAATCAGCTGCAGCACTTTCTCCCCTTACACCGGCGGCAAGCTATCCACAGTTCACGTAAGCTATCACTTCCTTCTTCTTCCGCCGTCAG CTGCAATGGGACGTGTCCGTACCAAGACCGTGAAGAAATCCTCGCGCCAGGTGATCGAGCGCTACTACTCGAAGATGACACTCGATTTCCACACCAACAA GAAGATCCTGGAAGAGGTGGCCATCATCCCCTCGAAGCGCCTCCGCAACAAGATCGCCGGGTTCTCCACCCACCTGATGAAGCGGATCCAGAAGGGCCCC GTTCGCGGCATCTCCCTCAAGCTTCAGGAGGAGGAGCGCGAGCGCCGCATGGACTTCGTCCCCGAACAATCCGCCATCAACACCGACAGGATTGAGGTCG ACAAGGAAACCCTTGACATGCTCAGCGCTCTCGGCATGAGCGGCGTTGAAGGCATCGTCGTCGTGGAACCCGGCACCGTCGCTCCGGTTTACGGGTTTGG CAGAGGCAGGAGGTTTTGA
AA sequence Show only first row Show all	>Lus10030344 pacid=23153028 polypeptide=Lus10030344 locus=Lus10030344.g ID=Lus10030344.BGIv1.0 annot-version=v1.0 MATSVQIRFNPVGAASQCKPTSKISRRLVRVSCAANASPKQHTITLLPGDGIGPEVISVAKNVLNLTASLEGIEFKYQEMPMGGSALDLVGVPLPDETLA AAKKSDAVLLGAIGGYKWDNNAKHLKPETGLLQIREGLKVFANLRPAAVFPQLVEASTLKKEVAEGVDVMVVRELTGGIYFGKPRGFRTDENGEEVGFNT EVYAAYEIDRIARVAFETARKRQGRLCSVDKANVLEASMLWRRRVTAIAEEYPDVAVSHMYVDNAAMQLIRNPKQFDTIVTNNIFGDILSDEASMITGSI GMLPSASLGSSGPGLFEPIHGSAPDIAGQDKANPLATILSAAMLLKYGLGQESAAKRIEKAVLDTLDKGFRTGDIYSPGTKLVGCKEMGEAVLRSVESQS SATSISCSTFSPYTGGKLSTVHVSYHFLLLPPSAAMGRVRTKTVKKSSRQVIERYYSKMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKRIQKGP VRGISLKLQEEERERRMDFVPEQSAINTDRIEVDKETLDMLSALGMSGVEGIVVVEPGTVAPVYGFGRGRRF

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G80560		ATIMD2	ARABIDOPSIS ISOPROPYLMALATE DE...		Lus10030344 [exp]	0	1
AT3G02080			Ribosomal protein S19e family ...		Lus10013188 [exp]	3.2	0.8962
AT3G62870			Ribosomal protein L7Ae/L30e/S1...		Lus10035632 [exp]	3.7	0.8913
AT5G18380			Ribosomal protein S5 domain 2-...		Lus10012599 [exp]	5.0	0.8751
AT4G25740			RNA binding Plectin/S10 domain...		Lus10027519 [exp]	6.5	0.8683
AT2G37270		ATRPS5B	ribosomal protein 5B (.1.2)		Lus10013381 [exp]	7.2	0.8796
AT5G48760			Ribosomal protein L13 family p...		Lus10011857 [exp]	7.9	0.8798
AT1G48830			Ribosomal protein S7e family p...		Lus10017497 [exp]	11.0	0.8681
AT3G10920		MSD1, MEE33, AT...	MATERNAL EFFECT EMBRYO ARREST ...		Lus10012883 [exp]	13.7	0.8379
AT1G74050			Ribosomal protein L6 family pr...		Lus10038776 [exp]	15.1	0.8725
AT2G27710			60S acidic ribosomal protein f...		Lus10043377 [exp]	15.2	0.8629

Compare expression of checked genes

Lus10030344 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.