Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G22870 858 / 0 Protein kinase family protein with ARM repeat domain (.1) AT1G71410 825 / 0 ARM repeat superfamily protein (.1) AT2G40730 69 / 8e-12 CTEXP cytoplasmic tRNA export protein, Protein kinase family protein with ARM repeat domain (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10007901 [exp] 1232 / 0 AT1G22870 912 / 0.0 Protein kinase family protein with ARM repeat domain (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G098700 [exp] 940 / 0 AT1G71410 1177 / 0.0 ARM repeat superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF00069 [flax] [poplar] Pkinase Protein kinase domain
Representative CDS sequence Show only first row Show all	>Lus10030346 pacid=23153170 polypeptide=Lus10030346 locus=Lus10030346.g ID=Lus10030346.BGIv1.0 annot-version=v1.0 ATGGCCATGGTGACGGAGCCGCTGTTTGCGTCGGTGGCTAACGTGCTTGGGAATCTTGAGAATGTTGAGAAGGTGCCCAAGGAGCTCCAGGGAATTGAAA TGGGGCTGTTGGAGGTGAAGCACGGGTTGCTCCAAGTCGCAGAAACTTTGGACTTTCTCCATAACAATGCTCATCTAATCCACCGAGCCATAACTCCCGA GGCAAGTTCTTACTGTCTGCTTGCAAAGTATTTACTATGCATCAAATTAGTGAGAATGTATCTGCCTATCCTATCTAGTCGTACAGAGTGGTTTGCTTTA CTCAGGCGTTATACCTACGAGTTATTTCAAGAATATGATGTAGAAGATTCCTTCATGCCTCTGCAGCCATCTTTAAATTACACAGCACCTGAACTTGTTC GCAGCAAGGTCCCTTCTGCTGGAAGTGCATCAGACATTTTCAGCTTTGGATGCCTCGCATACCACTTGATTGCTCATAAGCCTTTATTTGATTGCCACAA TAATGTTAAGATGTACATGAATACTTTGAATTACTTGTCCAGTGAGACATTCTCTTCCATTCCTGCGGAACTAGTTCCTGACTTGCAGAGGATGCTCTCT GCAAATGAGTCTCTCAGACAGACTGCCATTGATTTCACAGGTTCTGGATTTTTTCGTAATGACACGAGGTTGCGTGCTCTTCGCTTCCTGGACCACATGC TTGAGCGAGATAACATGCAGAAGTCAGAGTTCTTAAAAGCACTATCAGATATGTGGAAAGATTTCGACTCACGTGTATTGCGGTACAAGGTACTTCCACC TTTATGTGCAGAACTCAGGAATGTAGTTATGCAACCAATGATTCTCCCCATGGTTCTCGCCATAACCAAATCACAGGATAAAGTAGATTTCGAGCTTTCA ACACTCCCAGCTCTTGTGCCTGTTCTGACCACGGCTACTGGTGAGACACTGCTTCTTCTTGTCAAACATGCAGATCTCATTATCAACAAGGCTAGTCAGG AGACTTTGGTATCCAGTGTCTTGCACATGCTGGTTCGAGCTTATGATGATACTGATCCACGCATTCAGGAGGAAGTTCTGAGAAAATCTGTGCCTCTTGC CAAGCAGCTTGATCCACAGCTTGTGAAACAAGCAATTTTGCCTCGGGTCCATGGATTAGCTCTTAAAACTACTGTTGCTGCGGTGAGAGTGAATGCTCTG CTGTGCTTTGTAGATTTTGCCCAGATGCTTGACAAAAATGCTGTTCTGGAAATGTTGCAAACAATCCAGCGGTGTACAACAGTAGACCGTTCTGCTCCTA CCCTTATGTGTACTCTTGGAGTTGCAAATTCAATTCTTAAACAGTTTGGCGTGGAGTTTGTTGTGGAGCATGTTCTTCCTCTTCTTTCACCTCTGCTCAC TGCCCAACAGCTAAATGTGCAACAGTTTGCCAAATACATGCTGTTCGTGAAGGATGTACTAAGGATGATAGAAGAAAAACGAGGGGTTACAGTAAGTGAT TCTGGAATTCCGGAGACGAAGAGTGTACCTCATGTCAATGGGATTCAATCGCAAGCACCAAACAAAACAACTGGGAATGTTGCTCCTGCAGTAAGAAATG GTTCATCTTGGGATGAAGATTGGGGTCCTGTCAACAAAGGCCCTGCCTCTGCAAAGCAGCCTGCTATGACCAACTCATTACCACTTTCCTCTGCTTCAAA CAATTCATCGGCTGTTCCTAGTATGATTTCTAGTAGCCAGCAGCCTCTTCAATCATTGTCTTCTCTGTCAAAACCTTCCAGTATTTCTTCCTTGTCCAGT CAGCAACCAGCTATGTCCTCCTGCACTCCAGTGGACATAGAATGGCCTCCTAGGACATCTCCTGATGTGAACTCTCAAATAGGCGACAGTGGGAAACAAT TGAATACGGGATCACCATCCACACCAGCTATTGATGACATGGATCCTTTTGCTGATTGGCCACCAAGATCTAGCAGCACTGCCAGTGGCTCCACCTTATT GAACAATGGCAAGGTTGGATCACTGACTCCAACTTATGGCTCTAGCTTGATGACAAGCCGATCCAGCACCATCCAGACCAATGGTGGCAACAGCTGGGCA TTCAACAACCAGAATTCAGCTACCAATTCTACTGCTGGGAATACAGGGGGAGCTCTGTACAGCAGTGGACTGAATAATACCAACAATTCCCTTGGCTTCA TGAAAAGCAATCATGGAAGTATGGTTTCGTCGAATGAAAAGAAGTCTGCAGATCTGGAATCTATATTTGGTTCAGGCAGAAACGACCATATCGCTCCAAG GCTTGCTCCCCCTCCTTCAGCAGCTGTGGGCATGGGGAGAGGGAGAGGGAGAGGGGGCAGCTCAGCCTTGAAGCCTGTGAATGCGAAAACTCAGGCTGGA CAGTCACCTATCTTGGACTTACTATGA
AA sequence Show only first row Show all	>Lus10030346 pacid=23153170 polypeptide=Lus10030346 locus=Lus10030346.g ID=Lus10030346.BGIv1.0 annot-version=v1.0 MAMVTEPLFASVANVLGNLENVEKVPKELQGIEMGLLEVKHGLLQVAETLDFLHNNAHLIHRAITPEASSYCLLAKYLLCIKLVRMYLPILSSRTEWFAL LRRYTYELFQEYDVEDSFMPLQPSLNYTAPELVRSKVPSAGSASDIFSFGCLAYHLIAHKPLFDCHNNVKMYMNTLNYLSSETFSSIPAELVPDLQRMLS ANESLRQTAIDFTGSGFFRNDTRLRALRFLDHMLERDNMQKSEFLKALSDMWKDFDSRVLRYKVLPPLCAELRNVVMQPMILPMVLAITKSQDKVDFELS TLPALVPVLTTATGETLLLLVKHADLIINKASQETLVSSVLHMLVRAYDDTDPRIQEEVLRKSVPLAKQLDPQLVKQAILPRVHGLALKTTVAAVRVNAL LCFVDFAQMLDKNAVLEMLQTIQRCTTVDRSAPTLMCTLGVANSILKQFGVEFVVEHVLPLLSPLLTAQQLNVQQFAKYMLFVKDVLRMIEEKRGVTVSD SGIPETKSVPHVNGIQSQAPNKTTGNVAPAVRNGSSWDEDWGPVNKGPASAKQPAMTNSLPLSSASNNSSAVPSMISSSQQPLQSLSSLSKPSSISSLSS QQPAMSSCTPVDIEWPPRTSPDVNSQIGDSGKQLNTGSPSTPAIDDMDPFADWPPRSSSTASGSTLLNNGKVGSLTPTYGSSLMTSRSSTIQTNGGNSWA FNNQNSATNSTAGNTGGALYSSGLNNTNNSLGFMKSNHGSMVSSNEKKSADLESIFGSGRNDHIAPRLAPPPSAAVGMGRGRGRGGSSALKPVNAKTQAG QSPILDLL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G22870			Protein kinase family protein ...		Lus10030346 [exp]	0	1
AT5G23450		ATLCBK1	long-chain base (LCB) kinase 1...		Lus10010161 [exp]	2.4	0.8747
AT3G63460		EMB2221	transducin family protein / WD...		Lus10019752 [exp]	2.6	0.8870
AT5G42220			Ubiquitin-like superfamily pro...		Lus10021830 [exp]	6.0	0.8556
AT5G22350		ELM1	ELONGATED MITOCHONDRIA 1, Prot...		Lus10005191 [exp]	6.3	0.8436
AT5G45900		ATAPG7, ATG7, A...	AUTOPHAGY-RELATED 7, AUTOPHAGY...		Lus10015289 [exp]	6.3	0.8161
AT1G04140			Transducin family protein / WD...		Lus10000495 [exp]	8.1	0.8253
AT5G56240			unknown protein		Lus10008344 [exp]	9.5	0.8002
AT2G43160			ENTH/VHS family protein (.1.2....		Lus10026741 [exp]	9.7	0.8302
AT2G32850			Protein kinase superfamily pro...		Lus10003916 [exp]	9.8	0.8032
AT5G03540		ATEXO70A1	exocyst subunit exo70 family p...		Lus10043432 [exp]	12.4	0.8095

Compare expression of checked genes

Lus10030346 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.