Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G66460 424 / 2e-146 MAN7, AtMAN7 endo-beta-mannase 7, Glycosyl hydrolase superfamily protein (.1) AT5G01930 404 / 5e-138 MAN6, AtMAN6 endo-beta-mannase 6, Glycosyl hydrolase superfamily protein (.1) AT3G10890 395 / 3e-135 Glycosyl hydrolase superfamily protein (.1) AT3G10900 385 / 3e-131 Glycosyl hydrolase superfamily protein (.1) AT1G02310 362 / 3e-122 MAN1 endo-beta-mannanase 1, Glycosyl hydrolase superfamily protein (.1) AT2G20680 351 / 2e-117 MAN2, AtMAN2 endo-beta-mannase 2, Glycosyl hydrolase superfamily protein (.1) AT4G28320 341 / 2e-113 MAN5, AtMAN5 endo-beta-mannase 5, Glycosyl hydrolase superfamily protein (.1) AT3G30540 268 / 1e-86 Glycosyl hydrolase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10007900 [exp] 814 / 0 AT5G66460 417 / 4e-143 endo-beta-mannase 7, Glycosyl hydrolase superfamily protein (.1) Lus10014288 [exp] 425 / 2e-146 AT5G66460 583 / 0.0 endo-beta-mannase 7, Glycosyl hydrolase superfamily protein (.1) Lus10025995 [exp] 426 / 3e-143 AT5G66460 577 / 0.0 endo-beta-mannase 7, Glycosyl hydrolase superfamily protein (.1) Lus10014184 [exp] 410 / 2e-140 AT5G01930 674 / 0.0 endo-beta-mannase 6, Glycosyl hydrolase superfamily protein (.1) Lus10007210 [exp] 403 / 4e-138 AT5G66460 401 / 5e-138 endo-beta-mannase 7, Glycosyl hydrolase superfamily protein (.1) Lus10007211 [exp] 403 / 1e-132 AT1G02310 405 / 4e-134 endo-beta-mannanase 1, Glycosyl hydrolase superfamily protein (.1) Lus10039833 [exp] 347 / 1e-115 AT2G20680 633 / 0.0 endo-beta-mannase 2, Glycosyl hydrolase superfamily protein (.1) Lus10033687 [exp] 345 / 4e-115 AT2G20680 644 / 0.0 endo-beta-mannase 2, Glycosyl hydrolase superfamily protein (.1) Lus10031650 [exp] 344 / 1e-114 AT2G20680 655 / 0.0 endo-beta-mannase 2, Glycosyl hydrolase superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G022000 [exp] 440 / 2e-152 AT5G66460 573 / 0.0 endo-beta-mannase 7, Glycosyl hydrolase superfamily protein (.1) Potri.005G229600 [exp] 433 / 9e-150 AT5G66460 542 / 0.0 endo-beta-mannase 7, Glycosyl hydrolase superfamily protein (.1) Potri.005G120500 [exp] 427 / 2e-147 AT5G66460 588 / 0.0 endo-beta-mannase 7, Glycosyl hydrolase superfamily protein (.1) Potri.002G184500 [exp] 415 / 7e-143 AT5G66460 447 / 5e-156 endo-beta-mannase 7, Glycosyl hydrolase superfamily protein (.1) Potri.016G138600 [exp] 408 / 3e-139 AT5G01930 683 / 0.0 endo-beta-mannase 6, Glycosyl hydrolase superfamily protein (.1) Potri.006G109900 [exp] 408 / 1e-138 AT5G01930 659 / 0.0 endo-beta-mannase 6, Glycosyl hydrolase superfamily protein (.1) Potri.019G070200 [exp] 372 / 1e-126 AT3G10890 302 / 3e-100 Glycosyl hydrolase superfamily protein (.1) Potri.006G009400 [exp] 355 / 1e-118 AT4G28320 430 / 2e-148 endo-beta-mannase 5, Glycosyl hydrolase superfamily protein (.1) Potri.013G130400 [exp] 344 / 1e-114 AT2G20680 661 / 0.0 endo-beta-mannase 2, Glycosyl hydrolase superfamily protein (.1) Potri.016G014801 [exp] 194 / 4e-59 AT2G20680 231 / 2e-74 endo-beta-mannase 2, Glycosyl hydrolase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0058 [flax] [poplar] Glyco_hydro_tim PF00150 [flax] [poplar] Cellulase Cellulase (glycosyl hydrolase family 5)
Representative CDS sequence Show only first row Show all	>Lus10030347 pacid=23153097 polypeptide=Lus10030347 locus=Lus10030347.g ID=Lus10030347.BGIv1.0 annot-version=v1.0 ATGGCAACCTTCTTCTTCTTCTTCTTCACGAAAACTTCCATTAATGTTACCCTTCTCCTTCTTCTTCTCTTGATTTGCAACGTCAATACCGCTGTTAGTT ATGACTTATTTCCGGACCCTTTGAATATCACCATAACCTCATTTCTACCATCTCCTTCATTCTTACCTCCTGCTGCTTCTTCTTCATTTCCGCCGCCGCC CCCACCGACGCCACCATCATCACCGGCGGTAGTTTCATCAGTTCCGCTGTTGTTTATTGAGGCGAAAAATGGTCAATTCTTGTTGAACGGCTATCCCTTT CTGTTTAATGGGTTCAACTCATACTGGATGATGACGGTGGCTGCACAGACTGATCAACGCCATAAAGTTTCCGATGTATTTGAACAGGCCAAGGCCTCCG GCCTGACCGTATGCCGGACGTGGGCGTTCAGCGACGGATCATCCCCTCAATCTCTTCAAATGGCTCCCGGTGTTTATAATGAGCAAGTTTTTCAGGGGCT GGATTTCGTGATATCAGAAGCAAGAAGGAACGGGGTACGCCTAATCCTGACACTAACAAACAACTACAAGGACTATGGTGGAAGGCCTCAATATGTTTCC TGGGCAAGATCCGTCGGCGTTCCTGTCACCACCGACGACGATTTCTACACTCATCCTGTCCTGAAATGGTACTACAAGAACCATCTCACCAGAGTTCTAA CCAGGATCAATACCTTCACTGGCTTCTCTTACAAAGACGATCCGACCATCATGGCATGGGAGCTGATGAACGAGCCCCGTTGTGAGGCTGATCACTCCGG CGATACCGTCACTGGATGGGTTCAAGAGATGGCATCGTACGTGAAATCAATTGACAGTAAGCACTTGTTGGCAGTAGGAATGGAAGGTTTCTACGGGGAA TCAACTCCCGAAAAGCAAAGGTTCAACCCTGGTTACCAAGTCGGAACCGATTTCATCACCAGCAACCTTATCCAAGAAATCGATTTCGCCACCATCCACG CCTACCCTGACGCATGGCTGATCGGGAGGAGTCGATACGAGCAGACAGTGTTCATGCAAGGTTGGATAACGAGTCACGTGGCAGATTCGAGGACGATACT GAGGAAGCCGTTGGTGTTTGCTGAGTTTGGGTTGTCCAAGAAGAACACAGGGTACAGCATCATAGGGAGGGACGTGTTTCTGAGTGCTATCTACGGGAGC ATCTTTAGTTCTGCTAGATTCGGTGGAGGTATGGCTGGTGGATTGGTTTGGCAAGTGTTGGCCGAAGGGATGGAGTCGTACGATGATGGATATGAGATCG TTCTATCACAATCTCCGTCAACTTGCTTTGTCATTGCTCTGCAATCCAGGAGAATGACTGCTCTTCAACATGTTCTGCCCAAGGCTGCTTGA
AA sequence Show only first row Show all	>Lus10030347 pacid=23153097 polypeptide=Lus10030347 locus=Lus10030347.g ID=Lus10030347.BGIv1.0 annot-version=v1.0 MATFFFFFFTKTSINVTLLLLLLLICNVNTAVSYDLFPDPLNITITSFLPSPSFLPPAASSSFPPPPPPTPPSSPAVVSSVPLLFIEAKNGQFLLNGYPF LFNGFNSYWMMTVAAQTDQRHKVSDVFEQAKASGLTVCRTWAFSDGSSPQSLQMAPGVYNEQVFQGLDFVISEARRNGVRLILTLTNNYKDYGGRPQYVS WARSVGVPVTTDDDFYTHPVLKWYYKNHLTRVLTRINTFTGFSYKDDPTIMAWELMNEPRCEADHSGDTVTGWVQEMASYVKSIDSKHLLAVGMEGFYGE STPEKQRFNPGYQVGTDFITSNLIQEIDFATIHAYPDAWLIGRSRYEQTVFMQGWITSHVADSRTILRKPLVFAEFGLSKKNTGYSIIGRDVFLSAIYGS IFSSARFGGGMAGGLVWQVLAEGMESYDDGYEIVLSQSPSTCFVIALQSRRMTALQHVLPKAA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G66460		MAN7, AtMAN7	endo-beta-mannase 7, Glycosyl ...		Lus10030347 [exp]	0	1
AT1G25480			Aluminium activated malate tra...		Lus10035037 [exp]	4.5	0.8017
AT2G38510			MATE efflux family protein (.1...		Lus10025156 [exp]	15.4	0.7865
AT1G69550			disease resistance protein (TI...		Lus10005376 [exp]	17.4	0.7622
AT4G23700		ATCHX17	cation/H+ exchanger 17, cation...		Lus10024717 [exp]	22.2	0.7361
AT3G48670		RDM12, IDN2	RNA-DIRECTED DNA METHYLATION 1...		Lus10002305 [exp]	30.3	0.7580
AT3G02100			UDP-Glycosyltransferase superf...		Lus10015751 [exp]	37.9	0.7490
AT5G17260	NAC	ANAC086	NAC domain containing protein ...		Lus10010371 [exp]	40.0	0.7000
AT5G12380		ANNAT8	annexin 8 (.1)		Lus10010666 [exp]	43.8	0.6713
AT1G47271			Cystathionine beta-synthase (C...		Lus10001964 [exp]	45.2	0.7358
AT3G46620			zinc finger (C3HC4-type RING f...		Lus10012376 [exp]	47.4	0.6813

Compare expression of checked genes

Lus10030347 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.