Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G05590 712 / 0 HEXO2, ATHEX3 BETA-HEXOSAMINIDASE 3, beta-hexosaminidase 2 (.1) AT3G55260 219 / 4e-64 HEXO1, ATHEX2 beta-hexosaminidase 1 (.1) AT1G65590 211 / 4e-61 HEXO3, ATHEX1 beta-hexosaminidase 3 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10007899 [exp] 1088 / 0 AT1G05590 746 / 0.0 BETA-HEXOSAMINIDASE 3, beta-hexosaminidase 2 (.1) Lus10003292 [exp] 210 / 7e-60 AT3G55260 781 / 0.0 beta-hexosaminidase 1 (.1) Lus10030323 [exp] 207 / 1e-58 AT3G55260 772 / 0.0 beta-hexosaminidase 1 (.1) Lus10022251 [exp] 130 / 9e-32 AT1G65590 564 / 0.0 beta-hexosaminidase 3 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G232800 [exp] 765 / 0 AT1G05590 796 / 0.0 BETA-HEXOSAMINIDASE 3, beta-hexosaminidase 2 (.1) Potri.001G232600 [exp] 749 / 0 AT1G05590 798 / 0.0 BETA-HEXOSAMINIDASE 3, beta-hexosaminidase 2 (.1) Potri.008G079400 [exp] 216 / 8e-63 AT1G65590 781 / 0.0 beta-hexosaminidase 3 (.1) Potri.010G211000 [exp] 212 / 3e-61 AT3G55260 815 / 0.0 beta-hexosaminidase 1 (.1) Potri.008G049801 [exp] 45 / 1e-05 AT3G55260 108 / 6e-29 beta-hexosaminidase 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0546 [flax] [poplar] Hexosaminidase PF02838 [flax] [poplar] Glyco_hydro_20b Glycosyl hydrolase family 20, domain 2 CL0058 [flax] [poplar] Glyco_hydro_tim PF00728 [flax] [poplar] Glyco_hydro_20 Glycosyl hydrolase family 20, catalytic domain
Representative CDS sequence Show only first row Show all	>Lus10030348 pacid=23153076 polypeptide=Lus10030348 locus=Lus10030348.g ID=Lus10030348.BGIv1.0 annot-version=v1.0 ATGGCTTCCCATGCTTTGACCATCCTCCTCCTCCTCTTCCTTACCCTCCAATCATCCTCCTCATTACCGGTCAACGTCTGGCCAAAACCCACCTCCTTAT CCTGGTCCTCCCCACACACAATCACCACCCTCTCCAACACTTTCCAGATCACTTTCCCCTCTTCCAACACCTACCTCTCCGCCGCAGTCTCCCGCTACCA CACCCTCCTCCTCACCGAGTCCCACGCGCCAATAGTCGACCCCATTCTCGGCCGCAAAATCTCCGCCCAGTCCTCCACCCCACTCCACACCTTATCCATC TCCGTAGCCGACCTCAACGCGCCGCTTATCCACGGCGTCGACGAATCCTACGCCCTGTCCATCCCTTCCTCCTCCTCCTCAGCAGCAGCCAATCTAACCG CCGCCACGGTGTGGGGAGCGATGAGGGGGCTGGAAACGTTCTCGCAGCTGGTGTGGGGCCGGCAGAGGCGCGTTCCGTTGGGGGTGGAGGTGAGAGACGC GCCGCTGTTTGCGCACAGGGGGCTGCTGCTGGACACGGCGAGGAATTTCTACCCGGTTGAGGATATACTGAGGACGATCGCGGCGTTGAGCTATAATAAG ATGAATGTGTTCCACTGGCACATCACTGATTCGCACTCTTTCCCGCTGGAGCTACCGTCGGAGCCCGATCTGGCGGCCAAAGGATCGTATGGTCACGGGA TGAGGTATTCGGTTGGGGATGTGGCCCGGATTGTCCAGTTCGGGTACGAGCATGGTGTCCGGGTTATACCCGAGATCGACGCTCCTGCTCACACGGGTTC CTGGGCGCCAGCATACCCGGAGATAGTGACATGCGCAAACATGTTCTGGTGGCCAGCCGGGAGCTCATGGGATGATCGGTTAGCATCCGAGCCAGGAACC GGCCAACTCAACCCGCTCAACCCAAAAACCTACCAAGTGGTCAACAACGTCATAAACGACATCGTCTCCCTCTTCCCGGAACCATTCCTCCACGCCGGAG CCGACGAGGTGGTCCCTGCATGCTGGAAAACCGACCCGTCAATCCAATCCTACCTCTCCCAGGAAACCAACCACACCTTAAGCCAAATCCTCGAAACGTT CGTGAAAAACACGCACCCAAACATCGTATCTCACAACAGAACCGCCGTCTACTACGAAGACGTCTTGCTAAACCCCAACATAAAAGTCAGCCCGTCAATT TTCCCGCCGTCACAGACCATCTTCCAGACGTGGAACAACGGTCCCAACAACACCAAGCTGCTCGCCGCGGCGGGGTACCGAGTCATAGTCTCGTCGTGGG AGTTCTACTATTTGGACTGCGGCCACGGTGACTTCTTGGGGAATGATAGCAAGTATGACCCGCCGCCCACGTCATCGGACGTGGATAGTAACGGAGGGTC GTGGTGCGGGCCGTTTAAGACGTGGCAGAAGGTGTATAACTATGATATAACGTACGGTTTGAGCGAGGAGGAGAAGAGGTTGGTGATTGGTGGGGAGGTG GCCTTGTGGTCGGAGCAGATGGATGGGACGGTGGTGGACGGGAAGCTGTGGCCGAGGACGTCGGCGATGGCGGAGGCGATGTGGTCGGGGAATGTGGATG AGAAGGGAAGGAAGAGGTATGGGGAGGCTACGGATAGGATGAATGAGTGGAGGTATAGGATGGTTGGGAGAGGGATTATGGCTGAGCCTATTCAGCCTTT GTGGTGCGTTAAGAACCCTGGCATGTGTAACAACGTTCATGAGTCAGTTGATACTTAA
AA sequence Show only first row Show all	>Lus10030348 pacid=23153076 polypeptide=Lus10030348 locus=Lus10030348.g ID=Lus10030348.BGIv1.0 annot-version=v1.0 MASHALTILLLLFLTLQSSSSLPVNVWPKPTSLSWSSPHTITTLSNTFQITFPSSNTYLSAAVSRYHTLLLTESHAPIVDPILGRKISAQSSTPLHTLSI SVADLNAPLIHGVDESYALSIPSSSSSAAANLTAATVWGAMRGLETFSQLVWGRQRRVPLGVEVRDAPLFAHRGLLLDTARNFYPVEDILRTIAALSYNK MNVFHWHITDSHSFPLELPSEPDLAAKGSYGHGMRYSVGDVARIVQFGYEHGVRVIPEIDAPAHTGSWAPAYPEIVTCANMFWWPAGSSWDDRLASEPGT GQLNPLNPKTYQVVNNVINDIVSLFPEPFLHAGADEVVPACWKTDPSIQSYLSQETNHTLSQILETFVKNTHPNIVSHNRTAVYYEDVLLNPNIKVSPSI FPPSQTIFQTWNNGPNNTKLLAAAGYRVIVSSWEFYYLDCGHGDFLGNDSKYDPPPTSSDVDSNGGSWCGPFKTWQKVYNYDITYGLSEEEKRLVIGGEV ALWSEQMDGTVVDGKLWPRTSAMAEAMWSGNVDEKGRKRYGEATDRMNEWRYRMVGRGIMAEPIQPLWCVKNPGMCNNVHESVDT

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G05590		HEXO2, ATHEX3	BETA-HEXOSAMINIDASE 3, beta-he...		Lus10030348 [exp]	0	1
AT5G40510			Sucrase/ferredoxin-like family...		Lus10002520 [exp]	1.0	0.7717
AT5G42130		AtMfl1	MitoFerrinLike1, Mitochondrial...		Lus10042797 [exp]	8.0	0.7232
AT2G41475			Embryo-specific protein 3, (AT...		Lus10043273 [exp]	10.5	0.6969
AT2G22170			Lipase/lipooxygenase, PLAT/LH2...		Lus10037491 [exp]	13.2	0.7165
AT2G22170			Lipase/lipooxygenase, PLAT/LH2...		Lus10006497 [exp]	16.7	0.7086
AT5G16450			Ribonuclease E inhibitor RraA/...		Lus10026835 [exp]	25.7	0.6777
AT1G63930		ROH1	from the Czech 'roh' meaning '...		Lus10017519 [exp]	26.3	0.6312
AT5G59600			Tetratricopeptide repeat (TPR)...		Lus10040779 [exp]	39.9	0.5873
AT1G25550	GARP		myb-like transcription factor ...		Lus10041485 [exp]	40.5	0.6534
AT5G42300		UBL5	ubiquitin-like protein 5 (.1)		Lus10019939 [exp]	43.4	0.5961

Compare expression of checked genes

Lus10030348 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.