Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G10110 114 / 1e-31 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) AT2G18510 44 / 5e-05 EMB2444 embryo defective 2444, RNA-binding (RRM/RBD/RNP motifs) family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10007895 [exp] 240 / 2e-81 AT4G10110 153 / 9e-48 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Lus10024024 [exp] 50 / 4e-07 AT2G18510 275 / 5e-92 embryo defective 2444, RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Lus10041728 [exp] 50 / 4e-07 AT2G18510 436 / 1e-153 embryo defective 2444, RNA-binding (RRM/RBD/RNP motifs) family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G069000 [exp] 117 / 1e-32 AT4G10110 187 / 8e-61 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Potri.007G028300 [exp] 52 / 1e-07 AT2G18510 453 / 4e-160 embryo defective 2444, RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Potri.005G125300 [exp] 49 / 7e-07 AT2G18510 412 / 3e-144 embryo defective 2444, RNA-binding (RRM/RBD/RNP motifs) family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0221 [flax] [poplar] RRM PF00076 [flax] [poplar] RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
Representative CDS sequence Show only first row Show all	>Lus10030350 pacid=23153199 polypeptide=Lus10030350 locus=Lus10030350.g ID=Lus10030350.BGIv1.0 annot-version=v1.0 ATGTCTCGATCCATCTACATTGGTAATCGCTCTTCCCTTATTCGTTTCATTGATTGTTTGTCCGTGGAGCTTCGTTGTGATCTATCCAATTTCACGCAAA TCCGCTTCTTCTTTGATGTGCTTGTCTATTGGAGGTTCCTTGAATACTCACAGCTTTATTACGCTGCAGGGAATCTGGACGAGAGGGTGAGTAATAGGGT TCTGTATGATATTCTAATTCAAGCTGGTAGAGTGGTGGACTTGCACATTCCTCGCGACAGAGAAACTGATAGACCTAAAGGTTATGCATTTGCAGAGTAC GAATCTGAGGAGGTTGCTGAATATGCTATCAAGCTGTTTTCCGGCCTTGTTACTCTTTACAACCGAACACTGAGATTTAAGATCTCTGGGCAAGACAAGC CTCCACATAATCTTTCCAATGATTTGTCCGCTCCATACTCATCGAACAGATCAAGGTCTAATGGGGGGCCAGGTAATGGCGAGTTTGCTCGGCCTTCCCT TAGGATGCCGGCATTTGGATCAAGTTATTCTTTAAACCTAGTTTCCCCTGCCGTAACAACCTATCCTAATGGACATGGTTCCCATCACAATGGTTATGAT AACAGTCGGAGACTGTATGGGTCTCCATATGATAATGTTAGAGGGTCTAGGTTGCGACTCTAA
AA sequence Show only first row Show all	>Lus10030350 pacid=23153199 polypeptide=Lus10030350 locus=Lus10030350.g ID=Lus10030350.BGIv1.0 annot-version=v1.0 MSRSIYIGNRSSLIRFIDCLSVELRCDLSNFTQIRFFFDVLVYWRFLEYSQLYYAAGNLDERVSNRVLYDILIQAGRVVDLHIPRDRETDRPKGYAFAEY ESEEVAEYAIKLFSGLVTLYNRTLRFKISGQDKPPHNLSNDLSAPYSSNRSRSNGGPGNGEFARPSLRMPAFGSSYSLNLVSPAVTTYPNGHGSHHNGYD NSRRLYGSPYDNVRGSRLRL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G10110			RNA-binding (RRM/RBD/RNP motif...		Lus10030350 [exp]	0	1
AT5G35330		MBD2, MBD02, AT...	METHYL-CPG-BINDING DOMAIN PROT...		Lus10021593 [exp]	1.0	0.8018
AT4G38500			Protein of unknown function (D...		Lus10025082 [exp]	4.5	0.7524
AT1G12530			unknown protein		Lus10007047 [exp]	4.5	0.7853
AT2G20280	C3HZnF		Zinc finger C-x8-C-x5-C-x3-H t...		Lus10023164 [exp]	4.9	0.7567
AT1G17820			Putative integral membrane pro...		Lus10038326 [exp]	8.5	0.7504
AT5G18950			Tetratricopeptide repeat (TPR)...		Lus10024666 [exp]	9.2	0.7709
AT1G51710		ATUBP6, UBP6	ubiquitin-specific protease 6 ...		Lus10006870 [exp]	9.9	0.7398
AT4G24630			DHHC-type zinc finger family p...		Lus10028687 [exp]	16.2	0.7301
AT5G06810			Mitochondrial transcription te...		Lus10012021 [exp]	18.5	0.7347
AT5G25050			Major facilitator superfamily ...		Lus10026893 [exp]	23.5	0.6857

Compare expression of checked genes

Lus10030350 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.