Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G15420 146 / 2e-42 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10007894 [exp] 304 / 1e-104 AT1G15420 189 / 4e-59 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G060900 [exp] 194 / 3e-60 AT1G15420 163 / 5e-48 unknown protein Potri.001G173300 [exp] 186 / 5e-57 AT1G15420 164 / 2e-48 unknown protein
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF04003 [flax] [poplar] Utp12 Dip2/Utp12 Family
Representative CDS sequence Show only first row Show all	>Lus10030351 pacid=23153070 polypeptide=Lus10030351 locus=Lus10030351.g ID=Lus10030351.BGIv1.0 annot-version=v1.0 ATGGGGGCGGAAACAGCTGCAGGAGGAGGAGCCATTTCGATTGAGAAAAAGAAATCGAAGAAGAAACGAGCAGCATCTCATTTGGATGATCACGCAATTT CTGGATCTCATGAAGCAGTGGATGGAGTTCTTGTGGAAGATGATTTACTTGAGCCGACAATTGGCGAGAAACTTGCAAGTCTTGATTTACAAGATGGTAT AGCCAAACTCGGAGAGGCTCAAGAATTGTTACCTATAGGAAAGCTGCCAAGTGCCGATTCAGTTAACGTTCTGCTTAAGCAAGCACTGCATGCTGACGAC CGCTCTCTTCTGTTGGATTGCTTATATACCAAAGATGAGAAGGTTATTGCCAATTCAGTCTCCTTATTGAGTATGTCTGACGTCCTCCTGCTTCTACACT CTCTTGTAACTATAATTGAATCCAGGGGTGCAGTATTGGCATGTGCTCTTCCATGGTTAAGAAACCTGCTTCTTCTGCATGCAAGTGGTATAATGTCTCA GGAGTCTTCCCTCCGGTCACTCAATTCTTTGAATCAGCTGATTGAATCTAGAGTGTCGACCTTCCAATCAGCTCTTCAGTTGTCAAGCTGCATAGACTTA CTATGTCCAGGGATTGCCGATGATGGAGAAGATGTTGAAACATCAGCTCCGTTTATTTACGTGGATGATGATGATACTGACGATGAACAAGAGTCTGAAA ATGACGATGGTATGGAGACGGAGGAAGAAATCGAACGGTTTGACGGGCTAACTGACAGTGAAGGAGACATGGACGACTAA
AA sequence Show only first row Show all	>Lus10030351 pacid=23153070 polypeptide=Lus10030351 locus=Lus10030351.g ID=Lus10030351.BGIv1.0 annot-version=v1.0 MGAETAAGGGAISIEKKKSKKKRAASHLDDHAISGSHEAVDGVLVEDDLLEPTIGEKLASLDLQDGIAKLGEAQELLPIGKLPSADSVNVLLKQALHADD RSLLLDCLYTKDEKVIANSVSLLSMSDVLLLLHSLVTIIESRGAVLACALPWLRNLLLLHASGIMSQESSLRSLNSLNQLIESRVSTFQSALQLSSCIDL LCPGIADDGEDVETSAPFIYVDDDDTDDEQESENDDGMETEEEIERFDGLTDSEGDMDD

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G15420			unknown protein		Lus10030351 [exp]	0	1
AT5G11010			Pre-mRNA cleavage complex II p...		Lus10036655 [exp]	1.7	0.9187
AT1G80750			Ribosomal protein L30/L7 famil...		Lus10040040 [exp]	2.8	0.9210
AT1G69400			Transducin/WD40 repeat-like su...		Lus10026051 [exp]	3.5	0.8959
AT4G33250		ATTIF3K1, EIF3K	eukaryotic translation initiat...		Lus10039931 [exp]	4.6	0.9038
AT5G14600			S-adenosyl-L-methionine-depend...		Lus10014554 [exp]	4.7	0.8786
AT5G08180			Ribosomal protein L7Ae/L30e/S1...		Lus10000421 [exp]	6.0	0.9208
AT2G36620		RPL24A	ribosomal protein L24 (.1)		Lus10006314 [exp]	6.5	0.9039
AT5G13960		SDG33, KYP, SUV...	SET DOMAIN PROTEIN 33, KRYPTON...		Lus10002571 [exp]	6.6	0.9107
					Lus10010342 [exp]	8.4	0.8637
AT3G62390		TBL6	TRICHOME BIREFRINGENCE-LIKE 6 ...		Lus10002430 [exp]	9.4	0.8997

Compare expression of checked genes

Lus10030351 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.