Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G80210 232 / 4e-74 BRCC36A, AtBRCC36A BRCA1/BRCA2-containing complex 36 homolog A, Mov34/MPN/PAD-1 family protein (.1.2) AT3G06820 216 / 9e-69 BRCC36B, AtBRCC36B BRCA1/BRCA2-containing complex 36 homolog B, Mov34/MPN/PAD-1 family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10007893 [exp] 426 / 2e-150 AT1G80210 240 / 4e-76 BRCA1/BRCA2-containing complex 36 homolog A, Mov34/MPN/PAD-1 family protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G172800 [exp] 284 / 1e-93 AT1G80210 484 / 2e-170 BRCA1/BRCA2-containing complex 36 homolog A, Mov34/MPN/PAD-1 family protein (.1.2)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10030352 pacid=23153096 polypeptide=Lus10030352 locus=Lus10030352.g ID=Lus10030352.BGIv1.0 annot-version=v1.0 ATGTCAGGACCTATACCAGTTTCAGTTGTAAATAAAAGTTACATAGACGTGGAATCCTCACCAAGTAGCTCAGAAAATGCACCAGTAAAATCTGGAACAG CTAGGGGGGAAAGTCCCGAACAAGACACCGGCGATTCAAGATCAGCAGGAGGATCCTTGAAAGGCACGAGAAGACCTTTGGAGCTGGGTGATTTCTTTGC AAATGCTGATGCCAGTTACGCTGGAGGTGGGAGTACCAGATCGAACATTCCAACAATCAATTTGGAAAATGCAGCTATTGATATAGACCCCATGGATATG TCAGATGGGATGCAAGAAGCTATGCATCGTTCAAATATGGACGTGAGTGGTGCAGAATATGTTAGAAAAGAAATTACTCTACAAGTGTTGCCCACCTTGC TTATGCTCAACCTTGATTCACCTTTAGTGTCATTGACTGATCTGCAACGCGTGCTATTTGAAGAGGAAAGAGGGGCATATAATCAAGCCATATCCCAGAA TGTTAGGAATGGAAGAGTACACCCGCTCGCCTTCATTCACCACACCTCGACATATCAAGCTTCCCTCTGCAAATTAATTGAGTACTGCTTGAGTCCTGCC ATAAGTGCACTCCAGGATCGATTAAGAGAGAATGAAATCCGGTTGTCATTGCTTGCGGAGGAGGCGATGTTTTTGGAGAAGGAGACGGCAGCACAGGTTG CTGAGGCAGGTAGCCATTCTCCTGTTCAGGTTGCTTCTTCTCCCAGAGGAACCGCATCACCTCGTCAGAGGGAATTGCACAGTCCGTCTGGATCCCATAG TTCAAGAGGTTCAGCTGGCTTCAGCAATCGACACCGAACAGGACCTTGA
AA sequence Show only first row Show all	>Lus10030352 pacid=23153096 polypeptide=Lus10030352 locus=Lus10030352.g ID=Lus10030352.BGIv1.0 annot-version=v1.0 MSGPIPVSVVNKSYIDVESSPSSSENAPVKSGTARGESPEQDTGDSRSAGGSLKGTRRPLELGDFFANADASYAGGGSTRSNIPTINLENAAIDIDPMDM SDGMQEAMHRSNMDVSGAEYVRKEITLQVLPTLLMLNLDSPLVSLTDLQRVLFEEERGAYNQAISQNVRNGRVHPLAFIHHTSTYQASLCKLIEYCLSPA ISALQDRLRENEIRLSLLAEEAMFLEKETAAQVAEAGSHSPVQVASSPRGTASPRQRELHSPSGSHSSRGSAGFSNRHRTGP

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G80210		BRCC36A, AtBRCC...	BRCA1/BRCA2-containing complex...		Lus10030352 [exp]	0	1
AT5G17620			unknown protein		Lus10013643 [exp]	1.4	0.8655
AT5G17620			unknown protein		Lus10001340 [exp]	6.9	0.8135
AT4G36290		CRT1	compromised recognition of TCV...		Lus10014276 [exp]	9.2	0.8262
AT4G30900			DNAse I-like superfamily prote...		Lus10022154 [exp]	11.0	0.8062
AT5G39510		ZIG1, SGR4, ATV...	SHOOT GRAVITROPSIM 4, VESICLE ...		Lus10000565 [exp]	15.0	0.7679
AT4G10090		ELP6	elongator protein 6 (.1)		Lus10040357 [exp]	15.7	0.8010
AT4G25600			Oxoglutarate/iron-dependent ox...		Lus10038855 [exp]	16.1	0.7406
AT3G07020		UGT80A2, SGT	UDP-glucosyl transferase 80A2,...		Lus10022815 [exp]	19.3	0.7873
AT3G11210			SGNH hydrolase-type esterase s...		Lus10027793 [exp]	19.3	0.7506
AT5G27450		MVK, MK	mevalonate kinase (.1.2.3)		Lus10031513 [exp]	20.8	0.7844

Compare expression of checked genes

Lus10030352 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.