Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G38430 226 / 4e-70 unknown protein AT3G54310 196 / 5e-59 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10003276 [exp] 373 / 8e-128 AT2G38430 158 / 1e-44 unknown protein Lus10004782 [exp] 0 / 1 AT3G54310 47 / 1e-06 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G030300 [exp] 380 / 2e-130 AT2G38430 313 / 6e-104 unknown protein Potri.019G029800 [exp] 361 / 6e-123 AT2G38430 305 / 8e-101 unknown protein Potri.019G029900 [exp] 353 / 6e-120 AT2G38430 311 / 3e-103 unknown protein Potri.019G030200 [exp] 345 / 2e-116 AT2G38430 275 / 6e-89 unknown protein Potri.019G030050 [exp] 87 / 5e-21 AT2G38430 81 / 3e-19 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10030356 pacid=23153128 polypeptide=Lus10030356 locus=Lus10030356.g ID=Lus10030356.BGIv1.0 annot-version=v1.0 ATGGCTCGTTACGTTCCTCCAAACAAGCGGCACCCAGTGGAAAATGGGAGATCTTGTCCAACTCCAGAGGCTTTTGCTCCCCATTTCAGGAGGACTCTGA ATTTAGGCCGCCGGGAGTCTGGTGGGGTTCATAGATCTGACAACAGGATTATCTATTCCAACAATGCTATTTCGAGATGGTTTGCAGTTGGTTTGGATGA TCGCCATCAGTTTCCTCCTTATGTTAGTCTGGAGCTGATCACTGTCGACTCCGTTCAGCATCCAGAAGGAGAAAAGCGTTTGATCTTGGTGAATAAACAT CCATCTGAAGAGAGTGATGAACTAGTAGCACAGAAGTACTTGAAGGACAATCCTTGGGTGGTTATAGCATCTTCTGTTCTCGAGGATTTGCTCTCTTCTC TCCAGATATTGAGGACTGAAGTGGAGCCTCGGAGATTGAATCTTATCACGAAGCCTACACTAGTTGCTAGATTTGGCAAGATACTTTTTCGCGAGAGCCC TTCACTGAAGCTAGGAGGCCTTGGAAGGGATCATTTGGAAAATGCTTTGACAAATTCAAGACGTTCCTTGTACACAAATCTTCCTTCTTCTTATGTGGAT AGCATTGTGGGTCAAGTTTGCCCCATCATAGGATTGGATTTTGAGGAACAGAAGGATCTGTACTATGTGATGTTGTCTGATATTAGACATCCTGGTGAAA TTTTCTCCTGCAAATGTACTCTCGGAGAAGACAAAAAGCTTCAACTACACAAGGCATGTTTAAAAGATTTGTTCATACATTCTATCGAATTGAACCCAGT GAGGCAGATGGTTATGGATATATCGTGTCTCGAGAAAGACGTAGACATCCGGCTAATGCTATGCTCCAAGAGGATCATGACAGCTCTGCCCGACGATGAG ATGAAGAGCATTCTAGATGTGATTGGCTGTGCAGTGGTGGATGCAGAGGTGAAAGGTGGGTTGAAGTGGCCACTGGGGAAAAAGCAGTCTGGAGACAGGT ACAGTGTTGCTGGGGTGTGGCACACAGTCCACAAAGCTTATAGAAACGAATCCCTCCGGCTGAAAGTAAGGGATGTAGATCGATTTGATTTCTCGAATGG AACGGGGGAAGCAGCAAAGGAAGCTTTTTTTAAGTTGAGAGGGGTGGTTTCAGAAACATCACAGGCAAGTTTGTCTGGTTTCATGTTTTAA
AA sequence Show only first row Show all	>Lus10030356 pacid=23153128 polypeptide=Lus10030356 locus=Lus10030356.g ID=Lus10030356.BGIv1.0 annot-version=v1.0 MARYVPPNKRHPVENGRSCPTPEAFAPHFRRTLNLGRRESGGVHRSDNRIIYSNNAISRWFAVGLDDRHQFPPYVSLELITVDSVQHPEGEKRLILVNKH PSEESDELVAQKYLKDNPWVVIASSVLEDLLSSLQILRTEVEPRRLNLITKPTLVARFGKILFRESPSLKLGGLGRDHLENALTNSRRSLYTNLPSSYVD SIVGQVCPIIGLDFEEQKDLYYVMLSDIRHPGEIFSCKCTLGEDKKLQLHKACLKDLFIHSIELNPVRQMVMDISCLEKDVDIRLMLCSKRIMTALPDDE MKSILDVIGCAVVDAEVKGGLKWPLGKKQSGDRYSVAGVWHTVHKAYRNESLRLKVRDVDRFDFSNGTGEAAKEAFFKLRGVVSETSQASLSGFMF

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G38430			unknown protein		Lus10030356 [exp]	0	1
AT5G37150			P-loop containing nucleoside t...		Lus10035775 [exp]	1.4	0.7943
AT3G14250			RING/U-box superfamily protein...		Lus10026104 [exp]	1.7	0.7325
					Lus10004635 [exp]	4.5	0.7471
AT5G35410		ATSOS2, CIPK24,...	SNF1-RELATED PROTEIN KINASE 3....		Lus10043267 [exp]	18.0	0.6054
					Lus10008678 [exp]	19.6	0.5959
AT5G17260	NAC	ANAC086	NAC domain containing protein ...		Lus10010096 [exp]	21.4	0.6281
AT5G17260	NAC	ANAC086	NAC domain containing protein ...		Lus10007216 [exp]	26.6	0.5992
					Lus10006424 [exp]	28.1	0.4925
AT4G35580	NAC	NTL9, CBNAC	NAC transcription factor-like ...		Lus10030174 [exp]	39.7	0.5666
AT4G23630		RTNLB1, BTI1	Reticulan like protein B1, VIR...		Lus10019125 [exp]	42.3	0.5594

Compare expression of checked genes

Lus10030356 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.