Plant FIBer expression Database

Lus10030358 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT3G03100 263 / 1e-91 NADH:ubiquinone oxidoreductase, 17.2kDa subunit (.1.2)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10007886
[exp]
284 / 5e-100 AT3G03100 236 / 5e-81 NADH:ubiquinone oxidoreductase, 17.2kDa subunit (.1.2)
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.019G051400
[exp]
257 / 4e-89 AT3G03100 269 / 1e-93 NADH:ubiquinone oxidoreductase, 17.2kDa subunit (.1.2)
Potri.003G122100
[exp]
42 / 6e-05 AT4G26965 217 / 1e-72 NADH:ubiquinone oxidoreductase, 17.2kDa subunit (.1.2)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
PF05071 NDUFA12 NADH ubiquinone oxidoreductase subunit NDUFA12
Representative CDS sequence
>Lus10030358 pacid=23153090 polypeptide=Lus10030358 locus=Lus10030358.g ID=Lus10030358.BGIv1.0 annot-version=v1.0
ATGGCAGCAGTGGTGAAAGGAGTGCTCAATTCTATCAAAGATAAAGGGATCGGTGGCTTCTTACGCGAGGTGAGGTCAGAAGGCTACTTGAAGTGCATTC
TGGACGGGAACCTCTTGCAAACCAAAATCCACAACATAGGGGCAACAGTTGTTGGAGTCGACAAATTTGGCAACAAATACTATGAGAAACTGGGAGATAC
CCAATATGGGAGGCACCGCTGGGTTGAATATGCAGAGAAGGGTCGATACAATGCTTCTCAGGTGCCACCAGAATGGCATGGCTGGCTTCATTTTATTACC
GACCATACTGGAGATGAACTGTTGATGCTGAAGCCAAAGAGGTATGGCGTTGACCACAAGGAGAACGTGTCTGGACAGGGTTCAGACCAAATTTATCACT
CTAAAGGGCATGCCCTCAATCCGTTGCAGAAGAACTGGACAAGGTACCAGTCCTGGGAACCGGCCAAGAAAGAGTAA
AA sequence
>Lus10030358 pacid=23153090 polypeptide=Lus10030358 locus=Lus10030358.g ID=Lus10030358.BGIv1.0 annot-version=v1.0
MAAVVKGVLNSIKDKGIGGFLREVRSEGYLKCILDGNLLQTKIHNIGATVVGVDKFGNKYYEKLGDTQYGRHRWVEYAEKGRYNASQVPPEWHGWLHFIT
DHTGDELLMLKPKRYGVDHKENVSGQGSDQIYHSKGHALNPLQKNWTRYQSWEPAKKE

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT3G03100 NADH:ubiquinone oxidoreductase... Lus10030358
[exp]
0 1
AT2G42210 ATOEP16-3 Mitochondrial import inner mem... Lus10016278
[exp]
2.0 0.9175
AT5G67590 FRO1 FROSTBITE1, NADH-ubiquinone ox... Lus10019261
[exp]
2.4 0.9281
AT3G20920 translocation protein-related ... Lus10030136
[exp]
3.0 0.9074
AT1G76200 unknown protein Lus10016001
[exp]
4.7 0.8675
AT3G52300 ATPQ "ATP synthase D chain, mitocho... Lus10023492
[exp]
6.9 0.9031
AT3G47810 ATVPS29, MAG1 VACUOLAR PROTEIN SORTING 29, M... Lus10030497
[exp]
9.5 0.8997
AT3G25120 Mitochondrial import inner mem... Lus10013127
[exp]
10.6 0.8722
AT2G33220 GRIM-19 protein (.1) Lus10023693
[exp]
11.6 0.8608
AT5G53800 unknown protein Lus10003591
[exp]
11.7 0.8893
AT5G67590 FRO1 FROSTBITE1, NADH-ubiquinone ox... Lus10011547
[exp]
12.0 0.8834

Lus10030358 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.