Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G57040 133 / 1e-38 ATRR4, ARR9 RESPONSE REGULATOR 4, response regulator 9 (.1) AT2G41310 127 / 2e-36 ARR8, ATRR3 RESPONSE REGULATOR 8, response regulator 3 (.1) AT1G59940 121 / 4e-34 ARR3 response regulator 3 (.1) AT3G56380 117 / 1e-33 ARR17 response regulator 17 (.1) AT5G62920 116 / 1e-32 ARR6 response regulator 6 (.1) AT1G10470 116 / 6e-32 IBC7, ATRR1, ARR4, MEE7 maternal effect embryo arrest 7, INDUCED BY CYTOKININ 7, RESPONCE REGULATOR 1, response regulator 4 (.1) AT2G40670 112 / 3e-31 ARR16 response regulator 16 (.1.2) AT1G19050 112 / 4e-31 ARR7 response regulator 7 (.1) AT1G74890 109 / 7e-30 ARR15 response regulator 15 (.1) AT3G48100 108 / 1e-29 ATRR2, IBC6, ARR5 INDUCED BY CYTOKININ 6, ARABIDOPSIS THALIANA RESPONSE REGULATOR 2, response regulator 5 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10007885 [exp] 321 / 3e-113 AT2G41310 143 / 1e-42 RESPONSE REGULATOR 8, response regulator 3 (.1) Lus10029211 [exp] 130 / 2e-37 AT1G10470 211 / 4e-68 maternal effect embryo arrest 7, INDUCED BY CYTOKININ 7, RESPONCE REGULATOR 1, response regulator 4 (.1) Lus10030822 [exp] 130 / 6e-37 AT1G59940 201 / 2e-64 response regulator 3 (.1) Lus10030664 [exp] 127 / 1e-35 AT1G10470 206 / 2e-65 maternal effect embryo arrest 7, INDUCED BY CYTOKININ 7, RESPONCE REGULATOR 1, response regulator 4 (.1) Lus10004243 [exp] 118 / 5e-33 AT3G48100 220 / 2e-73 INDUCED BY CYTOKININ 6, ARABIDOPSIS THALIANA RESPONSE REGULATOR 2, response regulator 5 (.1) Lus10002750 [exp] 117 / 2e-32 AT3G57040 212 / 4e-69 RESPONSE REGULATOR 4, response regulator 9 (.1) Lus10042153 [exp] 116 / 3e-32 AT3G48100 213 / 1e-70 INDUCED BY CYTOKININ 6, ARABIDOPSIS THALIANA RESPONSE REGULATOR 2, response regulator 5 (.1) Lus10039524 [exp] 115 / 8e-32 AT3G57040 222 / 2e-73 RESPONSE REGULATOR 4, response regulator 9 (.1) Lus10016334 [exp] 114 / 3e-31 AT3G57040 211 / 5e-69 RESPONSE REGULATOR 4, response regulator 9 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G082200 [exp] 130 / 2e-37 AT3G57040 180 / 1e-56 RESPONSE REGULATOR 4, response regulator 9 (.1) Potri.016G038000 [exp] 128 / 7e-37 AT2G41310 242 / 2e-81 RESPONSE REGULATOR 8, response regulator 3 (.1) Potri.006G041100 [exp] 127 / 3e-36 AT3G57040 273 / 4e-93 RESPONSE REGULATOR 4, response regulator 9 (.1) Potri.001G027000 [exp] 123 / 4e-35 AT2G41310 203 / 2e-66 RESPONSE REGULATOR 8, response regulator 3 (.1) Potri.T124806 [exp] 122 / 4e-35 AT2G41310 232 / 6e-78 RESPONSE REGULATOR 8, response regulator 3 (.1) Potri.003G197466 [exp] 119 / 1e-33 AT2G41310 232 / 5e-78 RESPONSE REGULATOR 8, response regulator 3 (.1) Potri.010G037800 [exp] 119 / 4e-33 AT1G59940 202 / 5e-65 response regulator 3 (.1) Potri.019G058900 [exp] 114 / 3e-32 AT3G56380 223 / 5e-76 response regulator 17 (.1) Potri.008G193000 [exp] 114 / 2e-31 AT1G59940 198 / 1e-63 response regulator 3 (.1) Potri.015G070000 [exp] 111 / 2e-30 AT3G48100 231 / 1e-77 INDUCED BY CYTOKININ 6, ARABIDOPSIS THALIANA RESPONSE REGULATOR 2, response regulator 5 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0304 [flax] [poplar] CheY PF00072 [flax] [poplar] Response_reg Response regulator receiver domain
Representative CDS sequence Show only first row Show all	>Lus10030359 pacid=23153193 polypeptide=Lus10030359 locus=Lus10030359.g ID=Lus10030359.BGIv1.0 annot-version=v1.0 ATGGGGGAGGTGGTGGAGGCAGAAGTGAAGCCGGAGGCGGTGGTAGAGGAGCAGATTGATGATGAACAATTGCCGCCTATTCACGTCCTTGTGGTTGATG ACTGCTTCCTTGACCGAAGAATTGTTTCCAAGCTCCTCCTCAAAGCTTCCTTTAAAGTGACCACTGTTGATAGTGGGAAGAAGGCTTTGCAGGTTCTAGG GATTCATGCTGCTGATGATGCTGATACTGAAACAGTGGATACATCCAGCTCCATTCTTAATCAGGTGGAAAAGATTGATTTGATTCTCACAGACTTTTGC ATGCCTGAGATGAATGGACATGACCTTCTAGTGGCAGTCAAGGGCCACTCTGAAAAGAAGTCAACTCCTGTTGTCATCATGTCATCCGAGTACAATCCAC AGAGAATAACCAGTTGTCTTGAGAGTGGTGCAGAAGAGTTTCTGCAGAAGCCTCTGAAGCTAAAGGAAATGGAGAAATTGAGAAATTACGTCAGAACAGA AGCAGCCACCTTAACAAGGTCGGGGGCAAAGAGAAAAGCTGCCATGGAGTTAACGTCAGAGAACAATAGTGCTTCAGAAAAGCTGCCTCGTATGGCTGGA GTGGCCGTTGCCTGA
AA sequence Show only first row Show all	>Lus10030359 pacid=23153193 polypeptide=Lus10030359 locus=Lus10030359.g ID=Lus10030359.BGIv1.0 annot-version=v1.0 MGEVVEAEVKPEAVVEEQIDDEQLPPIHVLVVDDCFLDRRIVSKLLLKASFKVTTVDSGKKALQVLGIHAADDADTETVDTSSSILNQVEKIDLILTDFC MPEMNGHDLLVAVKGHSEKKSTPVVIMSSEYNPQRITSCLESGAEEFLQKPLKLKEMEKLRNYVRTEAATLTRSGAKRKAAMELTSENNSASEKLPRMAG VAVA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G41310		ARR8, ATRR3	RESPONSE REGULATOR 8, response...		Lus10030359 [exp]	0	1
AT2G19580		TET2	tetraspanin2 (.1)		Lus10007998 [exp]	6.6	0.7791
AT1G69530		ATHEXPALPHA1.2,...	EXPANSIN 1, expansin A1 (.1.2....		Lus10019088 [exp]	16.6	0.7825
AT5G55830			Concanavalin A-like lectin pro...		Lus10022520 [exp]	16.7	0.7036
AT4G15520			tRNA/rRNA methyltransferase (S...		Lus10012771 [exp]	20.0	0.6732
AT4G39700			Heavy metal transport/detoxifi...		Lus10016436 [exp]	24.7	0.7774
AT2G42380	bZIP	ATBZIP34	Basic-leucine zipper (bZIP) tr...		Lus10017656 [exp]	26.8	0.7350
AT4G39120		HISN7, IMPL2	HISTIDINE BIOSYNTHESIS 7, myo-...		Lus10041968 [exp]	26.9	0.7266
AT3G46060		ARA3, Ara-3, At...	RAB GTPase homolog 8A (.1.2.3)		Lus10005890 [exp]	29.0	0.6675
AT5G17800	MYB	ATMYB56	myb domain protein 56 (.1)		Lus10005683 [exp]	32.3	0.6859
AT3G01720			unknown protein		Lus10014878 [exp]	33.5	0.6633

Compare expression of checked genes

Lus10030359 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.