Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G26310 281 / 9e-96 elongation factor P (EF-P) family protein (.1), elongation factor P (EF-P) family protein (.2) AT3G08740 73 / 3e-15 elongation factor P (EF-P) family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10007884 [exp] 466 / 2e-168 AT4G26310 252 / 7e-84 elongation factor P (EF-P) family protein (.1), elongation factor P (EF-P) family protein (.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G004300 [exp] 305 / 2e-105 AT4G26310 249 / 3e-83 elongation factor P (EF-P) family protein (.1), elongation factor P (EF-P) family protein (.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0021 [flax] [poplar] OB PF09285 [flax] [poplar] Elong-fact-P_C Elongation factor P, C-terminal CL0021 [flax] [poplar] OB PF01132 [flax] [poplar] EFP Elongation factor P (EF-P) OB domain CL0107 [flax] [poplar] KOW PF08207 [flax] [poplar] EFP_N Elongation factor P (EF-P) KOW-like domain
Representative CDS sequence Show only first row Show all	>Lus10030360 pacid=23153094 polypeptide=Lus10030360 locus=Lus10030360.g ID=Lus10030360.BGIv1.0 annot-version=v1.0 ATGATGCGAGTTCTCCAACAACTATACAGTAGCCAGAGCTACAAGAGACTCCCTCAAGCGCTATTCTATGCTACCCGTGCTTCCTTTTCTACTTCTTCTT CTTTGCATGCAGTGTTGAATGTTTTGTCCTCCCCAAGCTATCACAGCAACGCCAATACTATTACCACCCCGATTACTGTAGGTTCCCTGAATCCATGGTC CTTAATTCAGCACCGTGGCGTTAAAGTGAATGCCATTCATTTGAGACCTGGAAATGTCATTGAAAAATCAGGGAGAATCTACCAGGTTGTAGACGTAGAA CATAGGCAGCGAGGAAGAGGAGGTGCAATGATGCAGATTGAGATTCGTGATGTCGACAATGGGTCAAAGCAAAACGCAAGGTTTGGCACTGAGGAGTCTG TTGAAAGGGTATTTGTTCAAGAAAAACCATTCACTTGTTTGTATACAGAAGATAAAATGGCTTATTTGATGGACCCTGTGAATTTTGAGCAACTGGAAGT GCCGTTGGAGCTATTTGGGAAGTCTGCTGCATATTTACAAGAGGATTTGAGAGTCAAATTGCAGCTATATGATGGTAGACCTTTATCAGGCTCTGTCCCA AAACAAGTGACCTGCTCGATTAAGGAAACACAGGCCAATATGAAGGGGGCGACAATCACCCCTAGGTATGTAAAAGCGGTGCTGGACAATGGTCTCAATG TTCAAGTACCGCCTTATTTAAAGATCGGCGAAAAGGTGATATTCAACACTGAGGATGATACATTTGTTAGCAGGGCATAA
AA sequence Show only first row Show all	>Lus10030360 pacid=23153094 polypeptide=Lus10030360 locus=Lus10030360.g ID=Lus10030360.BGIv1.0 annot-version=v1.0 MMRVLQQLYSSQSYKRLPQALFYATRASFSTSSSLHAVLNVLSSPSYHSNANTITTPITVGSLNPWSLIQHRGVKVNAIHLRPGNVIEKSGRIYQVVDVE HRQRGRGGAMMQIEIRDVDNGSKQNARFGTEESVERVFVQEKPFTCLYTEDKMAYLMDPVNFEQLEVPLELFGKSAAYLQEDLRVKLQLYDGRPLSGSVP KQVTCSIKETQANMKGATITPRYVKAVLDNGLNVQVPPYLKIGEKVIFNTEDDTFVSRA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G26310			elongation factor P (EF-P) fam...		Lus10030360 [exp]	0	1
AT4G22380			Ribosomal protein L7Ae/L30e/S1...		Lus10015295 [exp]	1.4	0.8643
AT5G11900			Translation initiation factor ...		Lus10013512 [exp]	5.7	0.7932
AT2G38130		ATMAK3	Acyl-CoA N-acyltransferases (N...		Lus10041514 [exp]	7.4	0.8374
AT5G51960			unknown protein		Lus10041422 [exp]	7.6	0.8433
AT3G10620		ATNUDX26	nudix hydrolase homolog 26 (.1...		Lus10033839 [exp]	8.7	0.7830
AT5G47570			unknown protein		Lus10000735 [exp]	10.6	0.8380
AT4G21720			unknown protein		Lus10017512 [exp]	13.4	0.7730
AT4G29170		ATMND1	Mnd1 family protein (.1.2)		Lus10002503 [exp]	17.3	0.7778
AT3G59470	FAR1_related		Far-red impaired responsive (F...		Lus10026854 [exp]	20.5	0.7891
AT2G36130			Cyclophilin-like peptidyl-prol...		Lus10021335 [exp]	20.8	0.7792

Compare expression of checked genes

Lus10030360 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.