Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G17170 210 / 7e-69 ATGSTU24 Arabidopsis thaliana Glutathione S-transferase \(class tau\) 24, glutathione S-transferase TAU 24 (.1) AT1G78320 207 / 1e-67 ATGSTU23 glutathione S-transferase TAU 23 (.1) AT1G78380 204 / 3e-66 GST8, ATGSTU19 GLUTATHIONE TRANSFERASE 8, A. THALIANA GLUTATHIONE S-TRANSFERASE TAU 19, glutathione S-transferase TAU 19 (.1) AT1G78360 200 / 1e-64 ATGSTU21 glutathione S-transferase TAU 21 (.1) AT1G17180 199 / 2e-64 ATGSTU25 glutathione S-transferase TAU 25 (.1) AT1G53680 194 / 2e-62 ATGSTU28 glutathione S-transferase TAU 28 (.1) AT1G78370 194 / 2e-62 ATGSTU20 glutathione S-transferase TAU 20 (.1) AT1G78340 187 / 8e-60 ATGSTU22 glutathione S-transferase TAU 22 (.1) AT1G17190 177 / 9e-56 ATGSTU26 glutathione S-transferase tau 26 (.1) AT3G43800 165 / 7e-51 ATGSTU27 glutathione S-transferase tau 27 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10026198 [exp] 216 / 5e-71 AT1G78380 295 / 3e-102 GLUTATHIONE TRANSFERASE 8, A. THALIANA GLUTATHIONE S-TRANSFERASE TAU 19, glutathione S-transferase TAU 19 (.1) Lus10042469 [exp] 212 / 2e-69 AT1G78380 284 / 5e-98 GLUTATHIONE TRANSFERASE 8, A. THALIANA GLUTATHIONE S-TRANSFERASE TAU 19, glutathione S-transferase TAU 19 (.1) Lus10019480 [exp] 212 / 3e-69 AT1G17180 231 / 6e-77 glutathione S-transferase TAU 25 (.1) Lus10042468 [exp] 211 / 8e-69 AT1G78380 306 / 6e-107 GLUTATHIONE TRANSFERASE 8, A. THALIANA GLUTATHIONE S-TRANSFERASE TAU 19, glutathione S-transferase TAU 19 (.1) Lus10005592 [exp] 208 / 8e-68 AT1G17180 271 / 9e-93 glutathione S-transferase TAU 25 (.1) Lus10042470 [exp] 208 / 1e-67 AT1G78380 291 / 1e-100 GLUTATHIONE TRANSFERASE 8, A. THALIANA GLUTATHIONE S-TRANSFERASE TAU 19, glutathione S-transferase TAU 19 (.1) Lus10026199 [exp] 214 / 1e-65 AT1G17160 496 / 8e-173 pfkB-like carbohydrate kinase family protein (.1.2) Lus10030020 [exp] 172 / 9e-54 AT1G17180 238 / 1e-79 glutathione S-transferase TAU 25 (.1) Lus10007883 [exp] 174 / 4e-52 AT5G19760 536 / 0.0 Mitochondrial substrate carrier family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G113000 [exp] 251 / 9e-85 AT1G78380 259 / 3e-88 GLUTATHIONE TRANSFERASE 8, A. THALIANA GLUTATHIONE S-TRANSFERASE TAU 19, glutathione S-transferase TAU 19 (.1) Potri.011G113125 [exp] 250 / 1e-84 AT1G78380 259 / 2e-88 GLUTATHIONE TRANSFERASE 8, A. THALIANA GLUTATHIONE S-TRANSFERASE TAU 19, glutathione S-transferase TAU 19 (.1) Potri.011G114000 [exp] 240 / 2e-80 AT1G17180 265 / 2e-90 glutathione S-transferase TAU 25 (.1) Potri.011G140800 [exp] 219 / 3e-72 AT1G78380 318 / 1e-111 GLUTATHIONE TRANSFERASE 8, A. THALIANA GLUTATHIONE S-TRANSFERASE TAU 19, glutathione S-transferase TAU 19 (.1) Potri.001G437400 [exp] 216 / 6e-71 AT1G78380 316 / 2e-110 GLUTATHIONE TRANSFERASE 8, A. THALIANA GLUTATHIONE S-TRANSFERASE TAU 19, glutathione S-transferase TAU 19 (.1) Potri.011G112900 [exp] 215 / 1e-70 AT1G17180 271 / 1e-92 glutathione S-transferase TAU 25 (.1) Potri.001G436600 [exp] 213 / 8e-70 AT1G78380 318 / 2e-111 GLUTATHIONE TRANSFERASE 8, A. THALIANA GLUTATHIONE S-TRANSFERASE TAU 19, glutathione S-transferase TAU 19 (.1) Potri.011G113300 [exp] 213 / 2e-69 AT1G17180 274 / 9e-94 glutathione S-transferase TAU 25 (.1) Potri.011G113100 [exp] 213 / 2e-69 AT1G17180 268 / 2e-91 glutathione S-transferase TAU 25 (.1) Potri.001G437000 [exp] 212 / 2e-69 AT1G78380 308 / 1e-107 GLUTATHIONE TRANSFERASE 8, A. THALIANA GLUTATHIONE S-TRANSFERASE TAU 19, glutathione S-transferase TAU 19 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0172 [flax] [poplar] Thioredoxin PF02798 [flax] [poplar] GST_N Glutathione S-transferase, N-terminal domain CL0497 [flax] [poplar] GST_C PF00043 [flax] [poplar] GST_C Glutathione S-transferase, C-terminal domain
Representative CDS sequence Show only first row Show all	>Lus10030362 pacid=23153092 polypeptide=Lus10030362 locus=Lus10030362.g ID=Lus10030362.BGIv1.0 annot-version=v1.0 ATGGCTGCTAATTCGGGCGAGCTCATACTTCTTGGCTGGGGAGCGAGTCCGTTTTCAGCGAGAGTAAAGATTGCGCTGGCTGAAAAAGGCGTTACTGAGT ACGAGTTTAGGCACGAAGACGTGCACAACAAAAGCACTCTGCTTCGGGAAATGAACCCAGCCACCAACCAAATCCCTGTCTTGATCCACAACGGCAAACC AATCTCTGATTCCCTCGTCATCGTCCAGTATATCGACCAGGTCTGGGCTCACAATTCCCCTTCCTCTTTGCTGCCTTCCGATCCTTACCACCGCGCCCAC GCCAGGTTCTGGGCCGATTACACCAGCAAGATTCACACAACGGGGATGGGGTTGTGGCAATCAAACGAGGAGAAAGTGAAGGAAGCATCAAGGAAAGAGA TGGGTGAAATCTTGAACAACTTAGAACAACAACTTGGTGAAAAGCCATACTTTGGCGGTGAAAAGTTTGGGTTGGTGGATTTAGCACTGATCCCATTCCA CAGCTTCTTCTACACATTCGACAAGGTTGGTGGGATGGGCATCCTCGCTGCTGCTGGGTTCCCGAAGTTGATGGAATGGGCTGAGAGATGCTTCACGGAG AAGGAGAGTGTCTCCAAAACACTGTGGGGCGCCCACCAGACTTACCAAGTCATCTCCAACTACAGGAAGAAGAAGGGTTTGGAGTAG
AA sequence Show only first row Show all	>Lus10030362 pacid=23153092 polypeptide=Lus10030362 locus=Lus10030362.g ID=Lus10030362.BGIv1.0 annot-version=v1.0 MAANSGELILLGWGASPFSARVKIALAEKGVTEYEFRHEDVHNKSTLLREMNPATNQIPVLIHNGKPISDSLVIVQYIDQVWAHNSPSSLLPSDPYHRAH ARFWADYTSKIHTTGMGLWQSNEEKVKEASRKEMGEILNNLEQQLGEKPYFGGEKFGLVDLALIPFHSFFYTFDKVGGMGILAAAGFPKLMEWAERCFTE KESVSKTLWGAHQTYQVISNYRKKKGLE

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G17170		ATGSTU24	Arabidopsis thaliana Glutathio...		Lus10030362 [exp]	0	1
AT4G01070		UGT72B1, GT72B1	UDP-GLUCOSE-DEPENDENT GLUCOSYL...		Lus10005951 [exp]	1.7	0.9776
AT5G17000			Zinc-binding dehydrogenase fam...		Lus10004379 [exp]	4.5	0.9593
AT4G37990		CAD-B2, ATCAD8,...	CINNAMYL-ALCOHOL DEHYDROGENASE...		Lus10025706 [exp]	4.9	0.9590
AT3G55470			Calcium-dependent lipid-bindin...		Lus10040291 [exp]	8.5	0.9376
AT3G61220		SDR1	short-chain dehydrogenase/redu...		Lus10000242 [exp]	8.5	0.9465
AT2G30140			UDP-Glycosyltransferase superf...		Lus10042261 [exp]	8.7	0.9567
AT3G14690		CYP72A15	"cytochrome P450, family 72, s...		Lus10026178 [exp]	12.1	0.9441
AT2G29420		GST25, ATGSTU7	GLUTATHIONE S-TRANSFERASE 25, ...		Lus10035241 [exp]	14.7	0.9513
AT3G13600			calmodulin-binding family prot...		Lus10039178 [exp]	14.8	0.9270
AT2G43820		SGT1, ATSAGT1, ...	UDP-glucose:salicylic acid glu...		Lus10006353 [exp]	15.3	0.9373

Compare expression of checked genes

Lus10030362 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.