Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G02390 572 / 0 ATPARP1, APP POLY\(ADP-RIBOSE\) POLYMERASE 1, poly(ADP-ribose) polymerase (.1) AT2G31320 196 / 2e-53 ATPARP2 poly(ADP-ribose) polymerase 2 (.1) AT5G22470 99 / 3e-21 NAD+ ADP-ribosyltransferases;NAD+ ADP-ribosyltransferases (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10007882 [exp] 967 / 0 AT4G02390 758 / 0.0 POLY\(ADP-RIBOSE\) POLYMERASE 1, poly(ADP-ribose) polymerase (.1) Lus10033871 [exp] 194 / 2e-52 AT2G31320 1372 / 0.0 poly(ADP-ribose) polymerase 2 (.1) Lus10019539 [exp] 121 / 1e-28 AT5G22470 957 / 0.0 NAD+ ADP-ribosyltransferases;NAD+ ADP-ribosyltransferases (.1) Lus10043383 [exp] 114 / 2e-26 AT5G22470 1079 / 0.0 NAD+ ADP-ribosyltransferases;NAD+ ADP-ribosyltransferases (.1) Lus10000104 [exp] 101 / 1e-25 AT4G02390 120 / 1e-33 POLY\(ADP-RIBOSE\) POLYMERASE 1, poly(ADP-ribose) polymerase (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G128200 [exp] 717 / 0 AT4G02390 827 / 0.0 POLY\(ADP-RIBOSE\) POLYMERASE 1, poly(ADP-ribose) polymerase (.1) Potri.014G128000 [exp] 505 / 7e-173 AT4G02390 587 / 0.0 POLY\(ADP-RIBOSE\) POLYMERASE 1, poly(ADP-ribose) polymerase (.1) Potri.002G041300 [exp] 185 / 1e-49 AT2G31320 1382 / 0.0 poly(ADP-ribose) polymerase 2 (.1) Potri.009G136501 [exp] 126 / 7e-34 AT4G02390 74 / 5e-16 POLY\(ADP-RIBOSE\) POLYMERASE 1, poly(ADP-ribose) polymerase (.1) Potri.009G143900 [exp] 104 / 3e-23 AT5G22470 1120 / 0.0 NAD+ ADP-ribosyltransferases;NAD+ ADP-ribosyltransferases (.1) Potri.004G184100 [exp] 46 / 6e-05 AT5G22470 539 / 0.0 NAD+ ADP-ribosyltransferases;NAD+ ADP-ribosyltransferases (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0084 [flax] [poplar] ADP-ribosyl PF00644 [flax] [poplar] PARP Poly(ADP-ribose) polymerase catalytic domain CL0084 [flax] [poplar] PF02877 [flax] [poplar] PARP_reg Poly(ADP-ribose) polymerase, regulatory domain CL0084 [flax] [poplar] PF05406 [flax] [poplar] WGR WGR domain CL0306 [flax] [poplar] HeH PF02037 [flax] [poplar] SAP SAP domain
Representative CDS sequence Show only first row Show all	>Lus10030363 pacid=23152968 polypeptide=Lus10030363 locus=Lus10030363.g ID=Lus10030363.BGIv1.0 annot-version=v1.0 ATGGCGAGCAACAAGCTCAAAGTAGACCAGCTCCGAGCCGAACTCCTCAAGCGCGGCCTCGATACATCCGGAACTAAGCCCTCCCTGTTGCGGAGATTAC AATCCGCTTTGGGGCAAGAGAGCCAGCAATCTGTAGATGCAGCTGCGGCCACCGACGGCGCCAGTCGTGGCAACGGCAAACGAGCAAGGGATGCTGGAGA CGAGGAGGACGGCGGCAATGGTTCTGTTGACAAAATCCAAGCCCTCGAGAAGTTTCGAGGCATGAATGTGAAGCAATTGCGCGAAGAAGCGAAGCTCCGT GGGGTTTCAGCTGCTGGAACGAAGAAGGAACTGCTCCAGAGGCTTTCTGGTGGTTTGGAAGACGGAAGGGATCCTGTAGATGCTCTTCAAGTTGAAAAAC AAGAAGAGATAGCCCAGGAGAAAATTGTAACCGCAACTAAGAAGGGGGCTGCCGTGCTGGATCAGTATCTTCCGGATCATATAAAGTCACAGTTCCATGT TGTCCAATCGACGAATGTTGGAAATAACAATAACAAGTTTTACGTCATTCAACTCTTAGAATCTGATGATGGTGGTAGATACATGGTATACAATAGATGG GGCAGGGCAGGAATTAAAGGACAAGATAAAGTATTTGGTCCCTACACTTCACGAGATCCTGCAATTCACGAGTTTGAGCAAAAGTTTTATGCGAAGACAA AGAACCATTGGTCTAATCGCAGAGAGTTTGAATGCCATCCGAAGTGCTATACCTGGCTGGAAATGGATTACGGAAACCAAGAGGAAGAAGCAACAGTTAT GCCTCGTGCTACAGGAAACCCGATTCAAGAAACACAACTTGATCCTCGTATCGCAAACTTTATCTCGTTGATCTGCAACATTAGCATGATGAGACAACAA ATGATGGAAATAGGATACAATGCTGATAAGTTGCCGCTTGGCAAGCTAAGCAAGGCAACGATATCGAAGGGCTATGAAGTCTTAAAAAGAATTGCAGATG TAATTGGTACAGCTGATAGGTCAACACTGGACCAATTAACCGGAGAGTTTTACACTGTTATTCCTCATGATTTTGGGTTCAAAAAAATGCGTGAGCTCTC CGTCTCCTCCTACCTCTCATTTCCAGACATACATTACAACTTTCAAGATAGGATAGCAATCCCACCTCTATCTTTCTCATCCAGACTGTCACTGGGTGAA ATCGAGGTTGCAACCAAGTTGTTGGAAGGTGAAGCAGGAACGCAGGATGATCCCTTGTATAGTTGCTACAAGCGACTGCACTGTAAACTGATCCCGGTCG AATTTAATTCCGAGGAATTCTCTATGATTGCTACATATATGCACAACACACATGCAAAAACGCATTCACAATACCAGGTGGACATCAGTCAGATACTGAA GGTCACACGAGAAAGTGATGCAGAGCGCTTCAGAAAGTTCTCCAACACAAAGAATAGAATGCTGTTGTGGCATGGTTCCCGCCTTACAAACTGGACTGGC ATCCTATCTCAAGGTATGGGGCACTATAATTTTCTTCCTTTGCTTCATTTTGACGATCATTGCAAGTATGATGCTGCCGAAACCCGAAAGTGCACTGACG GCGATATGGCTGAGCTTTCACAAGCCAAGTATGATGCTGATAAGTTGCCGCCTGGAAAGCTAAGCACAAAAGGTGTAGGTGCAACGGCTCCAGATATCTC CGAAGCAAAGGCACTTGAAGATGGCACAGTCGTTCCCTTGGGGAAGCCGAAACAACAAGGGCATTAG
AA sequence Show only first row Show all	>Lus10030363 pacid=23152968 polypeptide=Lus10030363 locus=Lus10030363.g ID=Lus10030363.BGIv1.0 annot-version=v1.0 MASNKLKVDQLRAELLKRGLDTSGTKPSLLRRLQSALGQESQQSVDAAAATDGASRGNGKRARDAGDEEDGGNGSVDKIQALEKFRGMNVKQLREEAKLR GVSAAGTKKELLQRLSGGLEDGRDPVDALQVEKQEEIAQEKIVTATKKGAAVLDQYLPDHIKSQFHVVQSTNVGNNNNKFYVIQLLESDDGGRYMVYNRW GRAGIKGQDKVFGPYTSRDPAIHEFEQKFYAKTKNHWSNRREFECHPKCYTWLEMDYGNQEEEATVMPRATGNPIQETQLDPRIANFISLICNISMMRQQ MMEIGYNADKLPLGKLSKATISKGYEVLKRIADVIGTADRSTLDQLTGEFYTVIPHDFGFKKMRELSVSSYLSFPDIHYNFQDRIAIPPLSFSSRLSLGE IEVATKLLEGEAGTQDDPLYSCYKRLHCKLIPVEFNSEEFSMIATYMHNTHAKTHSQYQVDISQILKVTRESDAERFRKFSNTKNRMLLWHGSRLTNWTG ILSQGMGHYNFLPLLHFDDHCKYDAAETRKCTDGDMAELSQAKYDADKLPPGKLSTKGVGATAPDISEAKALEDGTVVPLGKPKQQGH

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G02390		ATPARP1, APP	POLY\(ADP-RIBOSE\) POLYMERASE ...		Lus10030363 [exp]	0	1
AT1G01690		ATPRD3	ARABIDOPSIS THALIANA PUTATIVE ...		Lus10014774 [exp]	1.7	0.7712
AT1G63020		SMD2, PolIVa, S...	SILENCING MOVEMENT DEFICIENT 2...		Lus10006339 [exp]	10.8	0.7770
AT5G07400	FHA		forkhead-associated domain-con...		Lus10032515 [exp]	40.3	0.7068
AT5G58130		ROS3	REPRESSOR OF SILENCING 3, RNA-...		Lus10028101 [exp]	76.0	0.6962
AT1G69290			Pentatricopeptide repeat (PPR)...		Lus10037077 [exp]	80.5	0.7229
AT5G27240			DNAJ heat shock N-terminal dom...		Lus10042540 [exp]	88.0	0.6815
AT4G32010	B3	HSL1, HSI2-L1, ...	VP1/ABI3-LIKE 2, HSI2-like 1 (...		Lus10018440 [exp]	145.8	0.6898
AT1G80260		EMB1427	embryo defective 1427, Spc97 /...		Lus10018892 [exp]	166.3	0.6813
AT4G26430		CSN6B	COP9 signalosome subunit 6B (....		Lus10025606 [exp]	185.2	0.6720
AT5G38840	FHA		SMAD/FHA domain-containing pro...		Lus10034354 [exp]	191.6	0.6782

Compare expression of checked genes

Lus10030363 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.