Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G02400 641 / 0 U3 ribonucleoprotein (Utp) family protein (.1) AT5G08600 553 / 0 U3 ribonucleoprotein (Utp) family protein (.1), U3 ribonucleoprotein (Utp) family protein (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10007881 [exp] 1366 / 0 AT4G02400 636 / 0.0 U3 ribonucleoprotein (Utp) family protein (.1) Lus10033797 [exp] 86 / 3e-20 ND /
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G203700 [exp] 844 / 0 AT4G02400 627 / 0.0 U3 ribonucleoprotein (Utp) family protein (.1) Potri.014G128300 [exp] 822 / 0 AT4G02400 634 / 0.0 U3 ribonucleoprotein (Utp) family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF04615 [flax] [poplar] Utp14 Utp14 protein
Representative CDS sequence Show only first row Show all	>Lus10030364 pacid=23153117 polypeptide=Lus10030364 locus=Lus10030364.g ID=Lus10030364.BGIv1.0 annot-version=v1.0 ATGGTAGAGAAGAAGAGGAAATCTAGAGATGAGATGAAGCGTGGTAAGGAGAAACTCAACAGTAGTAAAGTCTCTGGCAACAGCAAGAAGAAGAAGAACG TTAAGAGGACTGGTCCTCGCTTGCCTAATGCGCTCTTAAAAGAGATGGATCGTACGAACCCTAGCAGTCAGTTCGATGATGAAGAGCTCGATGAGGATGG TGGATTCGATGTAGGGAAAGACTTGTATGAGTATGAGGAGGAGGTGCCTGAAGAGGAAGCTAAGAAAAATCGCCGTTTCGATAACATCAAGAACTTCGAT TATGAGCTCCCCGAGGATTTTAAGGATGAGAATGTACCATCAGATGATGATGATGACGATGATGATGATGACAATCACACTGACTTTGAGGACGAGGACC ACAGTGATGGAAGGAGCTTGAGAGATGTTGAGGATGAAGACGATAGAAAACATAAGAGGATGCTGAAAGAAATCACAAAGTTGCCAAGCGAAGCCTTTGA AGGTGGGAGGAAAAGGAATGAAGCTGTTATATCAGAGCCCTATCCAGAGTCTGAATACAATCCCAGTCGTGATGTTCTGGATGGCAGTGGATTACTTATT GTTGGAGATCTTCTTGGAAGGCATCAACAAAATTCATCATATAGTAAACTCCGGAAAGAAACTCGTCATGTGGAGACCAAGTTTGTACCCGTTTCAGCAC CACTTCCGAAGGAAGCTAGAGACAAGGTGGAGAGGCAAATAGCATATCGAGAATCAATCAAGAAAATCGAAAAATGGGATCCCTTGATTAAAAGGAATAG GGAGGCCCCTTCTCTTATTTTCGACAAAGATACTGACCTGGGATTTTCTACAGTTGGATCAATAGCTCAAGAATTTGAACCGAGAACTGAGTTCGAGAAG AAAATGGCTTCATTAGTTAATGACCATAGGGTTATTAATGCTCACAAAGAAGATGGTGTCAAGCTTCTGGAACTAAACAAGATATCTTTGGAGGATTATA AAAACTCTCGTGAACACATTGCCAAAATGCGAAGTCTTCTTTTCCGACATGAAATCAAGATGAAGCGCATAAAAAAGATAAAGTCAAAGGCCCACCGTCG AATGTTGAAGAGAGATAGAATTAAACTAGCATCTGTTGAAATGCAGATGGATCCAGAAGCAGCTAAAGAACTGGCAATGAAGCAAGAATTTAAGCGTGCC GAGGAACGAATGACGCTGAGGCACAAAAACAAGTCAAAATGGGCAAGGCGGGTCATAGAGCGTGGTCTGAATGCTCAAGATGACGGTACTCGAGCAGCCA TGGCAGAACAGCTCAGTCAGCATAATCTCTTAACAAGAAAAATGAATTCAATGAATGACAGTAGCAACAGCGATGACAGCAGCGATGAGGAATACGATGA AACTTCTGATGGTTCTGAACAGGATAGGGCATCTAAGTTGTTGATGAAAGCAAAAGAAAAGACCCTAGGCCTTTTGGAGGAGGAAGATGAAGTGCCAAAT TCAGGAGTTTTTACTTTGCCTTTTATGGCACGGGGATTGAAAAAGCAGAAGGATGCAGCAATTGAAGAAGCTAAACTAGCACTTCAAGAGTTTGAATCAT CTCTAAACCAAATGGAAGATGATACCATGGGTATTGCAGAAGGCACTGTAACTGGTAAAAGGGTATTCGGAGGAGCAAAAGAGAAGAAGGTTGCTCTTCC AGCTAAGAAGAGAAAGTTGAACGACGACCAATCCTCTGATAGCAACAGTGACGCTGAAGACGAAGAAACTATTGTTGATGAAAGAATCGATGATAGGCCG AAGAAAGTAAATGTTAGTTATTCTTTGCTTAATGAAGATGCTGAATCTCATCAGGAACCTCTCATTGTGGACTCAGAAAGCTTGACTGTGGCTCCAAGCA CAAAGACAACAAATGAAGTTTCTATCTTTGCATCAAACAATTGGAGAAAAATGAACAAGGCCAATGAAGTTGAATCCAGTTCAAAAAGTGCTCCAAAAGC TTTTCAGCCTGCTCTTCAGAATGAACGTCAAGAGGAGATGAGCGACGACAGTGATAGTGACAATGGAGGACAGATGATCGACGGCCATAGAGCATCATCA TCATATGAACTACCTTCACAAGCGGATCTTATCCACGAAGCGTTTGCTGGGGACGATGTGGAAGAGGAGTTTGCCAAAGACAAGGACGAAGCGTTAAACG TCGAAAACCCTGAGCCTCAAAAACCTGTCCTACTTCCCGGCTGGGGCCAATGGACTCATACACAGAAAAGGAAAGGCTTGCCCTCTTGGATGGAGGAAGA GCATAAACTGGCCAACAAGAAGAGAGATGAGGCTATCAAGAAAAGGAAAGATGCACGTCTCAAACATGTTATCATATCCGAGAAGATCGATAAAAAGGCT GAAAAATTACAGACAAAGACCTTGCCTTTCCCTTTCAAATCCAAGGAAGTCTTTGAGCAAAGCATGCGGAATCCCATCGGACCAGAATTCAACCCTGTAT CGACTTTTGCACCTCTTGTTCGACCTGAAGTGGTGAAGAAACCTGGAGTAATCATCGCACCTATCAAGTACGAAGACGTCGATCCACACGACAAGCAAGG TTTTAAGCAGCAAAAGCATAAGCAAAACCCGAAGGCGGCGAAGAATGGTGGTGCTAAGCGACAGAGGCTGAAGCCAGTGATTGTCAAGTCTTGA
AA sequence Show only first row Show all	>Lus10030364 pacid=23153117 polypeptide=Lus10030364 locus=Lus10030364.g ID=Lus10030364.BGIv1.0 annot-version=v1.0 MVEKKRKSRDEMKRGKEKLNSSKVSGNSKKKKNVKRTGPRLPNALLKEMDRTNPSSQFDDEELDEDGGFDVGKDLYEYEEEVPEEEAKKNRRFDNIKNFD YELPEDFKDENVPSDDDDDDDDDDNHTDFEDEDHSDGRSLRDVEDEDDRKHKRMLKEITKLPSEAFEGGRKRNEAVISEPYPESEYNPSRDVLDGSGLLI VGDLLGRHQQNSSYSKLRKETRHVETKFVPVSAPLPKEARDKVERQIAYRESIKKIEKWDPLIKRNREAPSLIFDKDTDLGFSTVGSIAQEFEPRTEFEK KMASLVNDHRVINAHKEDGVKLLELNKISLEDYKNSREHIAKMRSLLFRHEIKMKRIKKIKSKAHRRMLKRDRIKLASVEMQMDPEAAKELAMKQEFKRA EERMTLRHKNKSKWARRVIERGLNAQDDGTRAAMAEQLSQHNLLTRKMNSMNDSSNSDDSSDEEYDETSDGSEQDRASKLLMKAKEKTLGLLEEEDEVPN SGVFTLPFMARGLKKQKDAAIEEAKLALQEFESSLNQMEDDTMGIAEGTVTGKRVFGGAKEKKVALPAKKRKLNDDQSSDSNSDAEDEETIVDERIDDRP KKVNVSYSLLNEDAESHQEPLIVDSESLTVAPSTKTTNEVSIFASNNWRKMNKANEVESSSKSAPKAFQPALQNERQEEMSDDSDSDNGGQMIDGHRASS SYELPSQADLIHEAFAGDDVEEEFAKDKDEALNVENPEPQKPVLLPGWGQWTHTQKRKGLPSWMEEEHKLANKKRDEAIKKRKDARLKHVIISEKIDKKA EKLQTKTLPFPFKSKEVFEQSMRNPIGPEFNPVSTFAPLVRPEVVKKPGVIIAPIKYEDVDPHDKQGFKQQKHKQNPKAAKNGGAKRQRLKPVIVKS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G02400			U3 ribonucleoprotein (Utp) fam...		Lus10030364 [exp]	0	1
AT5G11240			transducin family protein / WD...		Lus10033468 [exp]	1.0	0.9555
AT5G23880		ATCPSF100, EMB1...	ENHANCED SILENCING PHENOTYPE 5...		Lus10035061 [exp]	1.4	0.9490
AT1G06720			P-loop containing nucleoside t...		Lus10013507 [exp]	2.4	0.9472
AT1G30240			unknown protein		Lus10026071 [exp]	2.6	0.9391
AT1G30240			unknown protein		Lus10014364 [exp]	2.8	0.9391
AT3G46210			Ribosomal protein S5 domain 2-...		Lus10037991 [exp]	4.9	0.9181
AT5G25757			RNA polymerase I-associated fa...		Lus10037897 [exp]	5.5	0.9413
AT2G40360			Transducin/WD40 repeat-like su...		Lus10011471 [exp]	5.5	0.9415
AT3G15460			Ribosomal RNA processing Brix ...		Lus10002403 [exp]	5.5	0.9363
AT1G06560			NOL1/NOP2/sun family protein (...		Lus10020761 [exp]	5.7	0.9341

Compare expression of checked genes

Lus10030364 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.